ylaboratory / seismicView external linksLinks
Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
☆25Dec 10, 2025Updated 2 months ago
Alternatives and similar repositories for seismic
Users that are interested in seismic are comparing it to the libraries listed below
Sorting:
- ☆14Jun 24, 2024Updated last year
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆35Jan 28, 2026Updated 2 weeks ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- Tissue-Gene Fine-Mapping☆26Mar 20, 2025Updated 10 months ago
- The local version of high-definition likelihood inference of genetic correlations (HDL-L)☆12Aug 8, 2025Updated 6 months ago
- ☆21Aug 20, 2024Updated last year
- ☆40Jan 13, 2026Updated last month
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆28Jul 30, 2025Updated 6 months ago
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆16Oct 7, 2025Updated 4 months ago
- ☆13Oct 1, 2025Updated 4 months ago
- ☆20Sep 12, 2025Updated 5 months ago
- deTS☆18Apr 21, 2020Updated 5 years ago
- MR-link-2: pleiotropy robust cis MR☆21Aug 4, 2025Updated 6 months ago
- Fine-mapping method only using summary statistics☆20Mar 23, 2016Updated 9 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- An R package for Mendelian Randomization in Mediation setting☆17Mar 17, 2025Updated 10 months ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆31Jun 4, 2024Updated last year
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆10Jan 19, 2024Updated 2 years ago
- R script for generating functionally informed genetic risk scores from TWAS☆11Jul 20, 2023Updated 2 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 2 years ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 2 months ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- ☆15Apr 20, 2021Updated 4 years ago
- GWAS genetics Fine-mapping method☆26Oct 16, 2024Updated last year
- Python script for multivariate GWAS meta-analysis☆24Dec 6, 2024Updated last year
- Network representation of LDSC results☆31Mar 16, 2022Updated 3 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- Manhattan++☆28Feb 13, 2024Updated 2 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 4 years ago
- ☆18Oct 4, 2023Updated 2 years ago
- causal TWAS (cTWAS)☆47Jan 20, 2026Updated 3 weeks ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆39Feb 8, 2025Updated last year
- A powerful TWAS framework leveraging summary-level reference data☆32Apr 1, 2025Updated 10 months ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆66Nov 23, 2025Updated 2 months ago
- ☆14Jun 10, 2025Updated 8 months ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆59Feb 12, 2021Updated 5 years ago
- FLAMES: Accurate gene prioritization in GWAS loci☆57Dec 16, 2025Updated last month
- Pariwise analysis of GWAS☆46Sep 27, 2018Updated 7 years ago