Alternatives and similar repositories for seismic

Users that are interested in seismic are comparing it to the libraries listed below

• BennyStrobes / TGFM
  Tissue-Gene Fine-Mapping
  ☆26Updated 8 months ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆12Updated 3 months ago
• hakyimlab / scPrediXcan
  ☆35Updated last week
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 4 years ago
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆37Updated 10 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated 2 years ago
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated 5 months ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆31Updated last week
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated last year
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆23Updated 7 years ago
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆31Updated 8 months ago
• dengchunyu / scPagwas
  Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
  ☆17Updated last year
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• horsedayday / eQTLsingle
  ☆15Updated 2 years ago
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 3 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆26Updated last year
• adriaan-vd-graaf / mrlink2
  MR-link-2: pleiotropy robust cis MR
  ☆21Updated 4 months ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 3 years ago
• hbliu / Open4Gene
  Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis
  ☆14Updated last week
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆16Updated 2 months ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆26Updated 3 years ago
• TiffanyAmariuta / TCSC
  TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.
  ☆13Updated last year
• szhang1112 / scPRS
  ☆30Updated 8 months ago
• immunogenomics / GeNA
  Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…
  ☆14Updated last year
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆11Updated 3 years ago
• segrelabgenomics / QTLEnrich
  Assessing enrichment of complex disease or trait associations among QTLs
  ☆15Updated 5 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆24Updated last year
• borangao / MESuSiE
  ☆21Updated 4 months ago
• ZhaotongL / cisMRcML
  ☆13Updated last year
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆35Updated 4 months ago