The single T cell annotation tool for scRNA-seq data
☆28Apr 25, 2025Updated last year
Alternatives and similar repositories for STCAT
Users that are interested in STCAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆23May 13, 2026Updated 2 months ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆55Jan 21, 2026Updated 6 months ago
- ☆36Jan 3, 2025Updated last year
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated last month
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆16Jun 30, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆108Jul 13, 2026Updated 3 weeks ago
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- Hierarchical Cell Annotation☆31Nov 17, 2024Updated last year
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆16Dec 1, 2025Updated 8 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆34Feb 28, 2022Updated 4 years ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 6 months ago
- ☆65Feb 21, 2026Updated 5 months ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆14Jan 28, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆45May 23, 2025Updated last year
- ☆16Sep 29, 2023Updated 2 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆26May 23, 2026Updated 2 months ago
- ☆33May 4, 2025Updated last year
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- ☆61Aug 6, 2025Updated last year
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆37Dec 15, 2025Updated 7 months ago
- ☆30Jan 30, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆127Mar 19, 2026Updated 4 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆83Jul 29, 2026Updated last week
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆39Dec 23, 2025Updated 7 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Updated this week
- A tool for semi-automatic cell type classification☆500May 22, 2026Updated 2 months ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- single cell Gene co-Expression Network Analysis☆10Sep 6, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 4 years ago
- Assessing the purity of single cell population☆154Jun 3, 2022Updated 4 years ago
- Methods to discover gene programs on single-cell data☆203Jul 21, 2026Updated 3 weeks ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆89Mar 19, 2026Updated 4 months ago
- ☆10Jul 9, 2024Updated 2 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 7 years ago