GuoBioinfoLab / STCATLinks
The single T cell annotation tool for scRNA-seq data
☆15Updated 3 months ago
Alternatives and similar repositories for STCAT
Users that are interested in STCAT are comparing it to the libraries listed below
Sorting:
- Robust identification of perturbed cell types in single-cell RNA-seq data☆32Updated 8 months ago
- A R package for advanced single cell data viz☆68Updated last year
- Methods for decontamination of single cell data☆47Updated 5 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 3 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆16Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆14Updated 6 months ago
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆78Updated last year
- Accurate and fast cell marker gene identification with COSG☆62Updated 2 years ago
- R tools for analysis and visualization of single-cell subclustering data☆17Updated last year
- Enrichment Networks for Pathway Enrichment Analysis☆56Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 9 months ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated 2 months ago
- ☆37Updated this week
- A pipeline for scRNA-seq data analysis☆15Updated 4 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 9 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆63Updated 4 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆23Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated last month
- Visualize the results of cell-cell communication analysis☆22Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- ☆68Updated last year
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆32Updated 10 months ago
- ☆37Updated 2 years ago
- ☆58Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- ☆50Updated 5 years ago