GuoBioinfoLab / STCAT
The single T cell annotation tool for scRNA-seq data
☆13Updated last month
Alternatives and similar repositories for STCAT:
Users that are interested in STCAT are comparing it to the libraries listed below
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆12Updated 3 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 5 months ago
- A pipeline for scRNA-seq data analysis☆13Updated last month
- Hierarchical Cell Annotation☆20Updated 5 months ago
- ☆37Updated 2 years ago
- R package of CSOmap(developing☆14Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 6 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆27Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated this week
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- ☆21Updated 3 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆50Updated 2 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- ☆33Updated last year
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- Integration of gut cell atlases☆23Updated 2 months ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆31Updated 10 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆27Updated 2 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆26Updated this week
- scWGCNA☆59Updated 2 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- Pseudotime Analysis for Bulk Data☆15Updated 8 months ago
- ☆32Updated 5 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆24Updated 10 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆24Updated 3 years ago
- ☆13Updated 7 years ago
- Repository for codes for the HBCA paper☆36Updated 2 years ago