qingjian1991 / MPTevol
☆10Updated 2 years ago
Alternatives and similar repositories for MPTevol:
Users that are interested in MPTevol are comparing it to the libraries listed below
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆9Updated 5 months ago
- ☆15Updated 2 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆20Updated last month
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- ☆12Updated 11 months ago
- ☆24Updated 2 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- Python function for TMB snake plots☆16Updated 4 years ago
- Code for EpiMap data browser☆14Updated 10 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ☆11Updated 4 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- ☆15Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated this week
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- eVITTA: an easy Visualization and Inference Toolbox for Transcriptome Analysis☆12Updated last year
- Machine learning use cases for teaching☆13Updated 7 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- ☆16Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆22Updated 4 months ago