Alternatives and similar repositories for MPTevol

Users that are interested in MPTevol are comparing it to the libraries listed below

• stephenturner / msigdf
  Molecular Signatures Database (MSigDB) in a data frame
  ☆17Updated 6 years ago
• AlexandrovLab / SigProfilerMatrixGeneratorR
  R wrapper for utilizing the SigProfilerMatrixGenerator framework
  ☆20Updated 2 years ago
• ju-lab / LungCancer_SV_timing_analyses
  ☆11Updated 5 years ago
• CompEpigen / ezASCAT
  Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R
  ☆11Updated 3 years ago
• caravagnalab / CNAqc
  CNAqc - Copy Number Alteration (CNA) Quality Check package
  ☆22Updated last month
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• AlexandrovLab / TMB_plotter
  Python function for TMB snake plots
  ☆16Updated 4 years ago
• MahnoorNGondal / scRNA-seq-ICB-cohorts
  This repository contained single-cell RNA-seq datasets with ICB treated patients
  ☆11Updated 8 months ago
• taoshengxu / CancerSubtypes
  ☆16Updated 2 years ago
• skandlab / MutSpot
  ☆16Updated 2 years ago
• beroukhim-lab / BISCUT-py3
  ☆12Updated last year
• ShixiangWang / Variants2Neoantigen
  A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
  ☆29Updated 5 years ago
• daisybio / SPONGE
  Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference
  ☆12Updated 11 months ago
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 3 years ago
• openbiox / Awesome-Bioinformatics-Workflow-Chinese
  Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目
  ☆27Updated 5 years ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆32Updated 3 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated last year
• crazyhottommy / single-cell-DNAseq-notes
  ☆16Updated 2 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• ShixiangWang / gcap
  GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…
  ☆20Updated 6 months ago
• liuhong-jia / scAnno
  ☆24Updated last month
• ShixiangWang / ezcox
  Easily Process a Batch of Cox Models
  ☆23Updated 2 weeks ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• lianos / multiGSEA
  NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …
  ☆21Updated 4 years ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated 3 months ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 4 months ago
• quevedor2 / aneuploidy_score
  R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…
  ☆16Updated 4 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆22Updated 5 months ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 5 years ago