qingjian1991 / MPTevolLinks
☆10Updated 2 years ago
Alternatives and similar repositories for MPTevol
Users that are interested in MPTevol are comparing it to the libraries listed below
Sorting:
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- ☆16Updated 2 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated 3 months ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆11Updated 9 months ago
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Updated 5 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 3 years ago
- Python function for TMB snake plots☆16Updated 5 years ago
- BioCarta pathway images☆11Updated last year
- Code for EpiMap data browser☆14Updated last year
- Gene-level general linear mixed model☆22Updated 7 months ago
- Cancer circRNA identification pipeline with an ensemble approach☆17Updated 8 months ago
- ☆12Updated last year
- ☆25Updated 2 months ago
- ☆16Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ESTIMATE tumor infiltration, the tidy way☆16Updated 2 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated last week
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆12Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Explore the cancer relevance of your gene list☆51Updated 6 months ago
- Course Materials for Genomics Data Mining☆22Updated this week
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆27Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- ☆12Updated 5 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago