Alternatives and similar repositories for scResolve

Users that are interested in scResolve are comparing it to the libraries listed below

• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆31Updated 11 months ago
• Jonyyqn / scMalignantFinder
  scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…
  ☆17Updated last month
• ding-lab / ST_subclone_publication
  Code for spatial subclone paper
  ☆16Updated last year
• sdentro / copykat_pipeline
  ☆13Updated 2 years ago
• ventolab / Human-Gonadal-Development-Atlas_HGDA
  ☆21Updated last year
• devsystemslab / HNOCA-tools
  Toolbox of the Human Neural Organoid Cell Atlas
  ☆29Updated this week
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated last year
• liuqivandy / SpaGene
  ☆27Updated 2 years ago
• yi-zhang / STHD
  STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition
  ☆35Updated 9 months ago
• jranek / EVI
  Integrating temporal gene expression modalities for trajectory inference and disease prediction
  ☆10Updated 3 years ago
• karthikj89 / humanpdac
  single cell analysis of treatment naive and treated human PDAC
  ☆25Updated 3 years ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆24Updated 4 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆22Updated 2 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆30Updated 2 years ago
• wanglabtongji / SpaceScanner
  Scanner of specific spatial patterns in tissues
  ☆14Updated 3 years ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆34Updated 9 months ago
• multitalk / miRTalk
  Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data
  ☆17Updated 9 months ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆15Updated last year
• soumelis-lab / ICELLNET
  ☆23Updated 6 months ago
• coskunlab / scSpaMet
  ☆12Updated 2 years ago
• ding-lab / mushroom
  A computational tool for identification of 3D multi-modal spatial neighborhoods
  ☆15Updated 6 months ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆20Updated 4 years ago
• kaizhang / single-cell-benchmark
  ☆11Updated 2 years ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆17Updated last year
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆46Updated 5 months ago
• theislab / ncem_tutorials
  ☆13Updated 3 years ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated 2 years ago
• zhang-bin-98 / A-spatial-transcriptome-landscape-of-mouse-aging
  ☆16Updated last year
• xichensf / magical
  R and MATLAB scripts for MAGICAL
  ☆11Updated last year
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year