Alternatives and similar repositories for scResolve:

Users that are interested in scResolve are comparing it to the libraries listed below

• sdentro / copykat_pipeline
  ☆11Updated last year
• WWXkenmo / ICAnet
  Independent Component Analysis decipher functional modules for better cell clustering and annotation
  ☆16Updated 2 years ago
• azizilab / DIISCO_public
  Publically accessible code for DIISCO method
  ☆10Updated 3 months ago
• YiLab-SC / scHolography
  ☆10Updated 8 months ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆24Updated last year
• theislab / ncem_tutorials
  ☆12Updated 2 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆26Updated last year
• wanglab-broad / CAST
  CAST package
  ☆29Updated 3 months ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆24Updated last month
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆18Updated last year
• haoshijie13 / LISTA
  Codes used in LISTA project.
  ☆10Updated 10 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆24Updated 5 months ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated 11 months ago
• Teichlab / HCA_Heart_ver2
  ☆27Updated last year
• KPMP / Cell-State-Atlas-2022
  Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
  ☆15Updated 11 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 2 months ago
• LaughneyLab / ContactTracing_tutorial
  ☆14Updated 5 months ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆29Updated 2 weeks ago
• Olaniru / human-fetal-pancreas
  analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages
  ☆9Updated 2 years ago
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆20Updated 2 years ago
• wanglab-broad / spin
  SPatial INtegration of spatially resolved transcriptomics datasets
  ☆13Updated 5 months ago
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆11Updated 10 months ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆29Updated 5 months ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆26Updated 11 months ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆20Updated 2 years ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆25Updated last month