LiQian-XC / sctourLinks
A deep learning architecture for robust inference and accurate prediction of cellular dynamics
☆68Updated last month
Alternatives and similar repositories for sctour
Users that are interested in sctour are comparing it to the libraries listed below
Sorting:
- R implementation of GeneTrajectory☆63Updated last year
- ☆56Updated 11 months ago
- ☆125Updated 3 years ago
- Predict RNA velocity through deep learning☆70Updated last year
- ☆45Updated last year
- Accurate and fast cell marker gene identification with COSG☆49Updated 5 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated last month
- ☆58Updated 2 months ago
- Gene group activity utility functions for Scanpy☆87Updated 8 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- A tool for semi-automatic cell type harmonization and integration☆110Updated 5 months ago
- ☆39Updated 2 years ago
- inferring regulatory cellular dynamics☆56Updated this week
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated last year
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆37Updated 7 months ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆25Updated 3 months ago
- Construct Tumor Transition Zone Microenvironment☆48Updated 2 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 4 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆132Updated 6 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆111Updated 11 months ago
- Functional Inference of Gene Regulation☆46Updated last year
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆77Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated last month
- Single-Cell Inference of Class Switch Recombination☆19Updated last week