LiQian-XC / sctourLinks
A deep learning architecture for robust inference and accurate prediction of cellular dynamics
☆71Updated 5 months ago
Alternatives and similar repositories for sctour
Users that are interested in sctour are comparing it to the libraries listed below
Sorting:
- R implementation of GeneTrajectory☆69Updated last year
- Gene group activity utility functions for Scanpy☆99Updated last year
- Predict RNA velocity through deep learning☆72Updated 2 years ago
- ☆61Updated last month
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆80Updated 8 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆40Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- ☆127Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- ☆46Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆85Updated 2 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 5 months ago
- Functional Inference of Gene Regulation☆49Updated last year
- Accurate and fast cell marker gene identification with COSG☆54Updated 3 weeks ago
- A tool for semi-automatic cell type harmonization and integration☆117Updated 2 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆72Updated 4 years ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- Single-Cell Inference of Class Switch Recombination☆20Updated 2 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆30Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 4 months ago
- Draw phylogenetic trees of tumor evolution☆87Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆60Updated 2 weeks ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆114Updated 8 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated last month
- ☆60Updated 2 weeks ago
- ☆57Updated last year
- inferring regulatory cellular dynamics☆62Updated this week