LiQian-XC / sctourLinks
A deep learning architecture for robust inference and accurate prediction of cellular dynamics
☆67Updated last month
Alternatives and similar repositories for sctour
Users that are interested in sctour are comparing it to the libraries listed below
Sorting:
- R implementation of GeneTrajectory☆63Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆83Updated last year
- ☆45Updated last year
- ☆56Updated 2 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 3 weeks ago
- Accurate and fast cell marker gene identification with COSG☆46Updated 5 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- Functional Inference of Gene Regulation☆46Updated last year
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- inferring regulatory cellular dynamics☆50Updated last week
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆67Updated 3 years ago
- ☆125Updated 3 years ago
- A tool for semi-automatic cell type harmonization and integration☆109Updated 5 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Draw phylogenetic trees of tumor evolution☆81Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆76Updated 4 months ago
- ☆55Updated 10 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆108Updated 3 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 3 months ago
- ☆62Updated 6 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆37Updated 6 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago