LiQian-XC / sctourLinks
A deep learning architecture for robust inference and accurate prediction of cellular dynamics
☆64Updated last year
Alternatives and similar repositories for sctour
Users that are interested in sctour are comparing it to the libraries listed below
Sorting:
- Predict RNA velocity through deep learning☆70Updated last year
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- R implementation of GeneTrajectory☆59Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆64Updated 3 years ago
- inferring regulatory cellular dynamics☆48Updated last week
- A tool for semi-automatic cell type harmonization and integration☆108Updated 3 months ago
- ☆54Updated 2 weeks ago
- ☆122Updated 3 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year
- ☆45Updated last year
- Draw phylogenetic trees of tumor evolution☆80Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆68Updated 8 months ago
- ☆53Updated 9 months ago
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Single cell omics biology annotations☆51Updated 2 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆76Updated this week
- Metacells - Single-cell RNA Sequencing Analysis☆108Updated 9 months ago
- ☆54Updated 11 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆54Updated 2 months ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 3 months ago
- ☆36Updated 2 weeks ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Functional Inference of Gene Regulation☆45Updated last year
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆51Updated last month
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆51Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆107Updated 2 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆117Updated 10 months ago
- Create cisTarget databases☆52Updated 3 weeks ago