LiQian-XC / sctourLinks
A deep learning architecture for robust inference and accurate prediction of cellular dynamics
☆70Updated 4 months ago
Alternatives and similar repositories for sctour
Users that are interested in sctour are comparing it to the libraries listed below
Sorting:
- ☆59Updated 5 months ago
- R implementation of GeneTrajectory☆65Updated last year
- Predict RNA velocity through deep learning☆71Updated last year
- ☆46Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆77Updated 3 months ago
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 2 months ago
- A tool for semi-automatic cell type harmonization and integration☆115Updated last month
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 4 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 10 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- ☆59Updated last year
- Accurate and fast cell marker gene identification with COSG☆53Updated last month
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆79Updated 7 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- Functional Inference of Gene Regulation☆49Updated last year
- ☆126Updated 3 years ago
- inferring regulatory cellular dynamics☆60Updated 2 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆85Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Single-Cell Inference of Class Switch Recombination☆20Updated 3 weeks ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- ☆40Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- ☆31Updated 3 years ago
- ☆60Updated 3 months ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago