cell type deconvolution for multi-condition bulk RNA-seq data
☆33Feb 28, 2022Updated 4 years ago
Alternatives and similar repositories for MuSiC2
Users that are interested in MuSiC2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆15Mar 23, 2024Updated 2 years ago
- Single-Cell Inference of Class Switch Recombination☆23Feb 11, 2026Updated 4 months ago
- ☆17Jun 17, 2021Updated 4 years ago
- ☆23Apr 17, 2026Updated last month
- scTM: A package for topic modelling in transcriptomics data☆26May 1, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Spot pseudo-Imager on top of histology☆50Dec 12, 2025Updated 6 months ago
- The single T cell annotation tool for scRNA-seq data☆27Apr 25, 2025Updated last year
- Multi-subject Single Cell Deconvolution☆301Mar 4, 2024Updated 2 years ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 4 months ago
- ☆12May 14, 2024Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆87Mar 19, 2026Updated 2 months ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23May 20, 2023Updated 3 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- trajectory inference☆109Jan 27, 2025Updated last year
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆28Jun 21, 2023Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆142Mar 13, 2026Updated 3 months ago
- SCDC☆47Jun 20, 2025Updated 11 months ago
- scAB detects multiresolution cell states with clinical significance☆22Nov 14, 2022Updated 3 years ago
- Gene group activity utility functions for Scanpy☆107Dec 21, 2024Updated last year
- ☆64Aug 26, 2025Updated 9 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 11 months ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆22Jan 23, 2026Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Jun 2, 2026Updated last week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆188Aug 12, 2025Updated 10 months ago
- This is the alpha version of the CellOracle package☆462Apr 30, 2026Updated last month
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 2 months ago
- ☆67Aug 2, 2019Updated 6 years ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆17Jul 9, 2023Updated 2 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated last year
- Assessing the purity of single cell population☆150Jun 3, 2022Updated 4 years ago
- ☆89Jun 29, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆82Jul 20, 2025Updated 10 months ago
- ☆61Feb 13, 2026Updated 4 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 10 months ago
- ☆33May 4, 2025Updated last year
- ☆16Sep 29, 2023Updated 2 years ago
- Interactive TooManyCells Trees☆14Dec 6, 2024Updated last year