Jiaxin-Fan / MuSiC2Links
cell type deconvolution for multi-condition bulk RNA-seq data
☆31Updated 3 years ago
Alternatives and similar repositories for MuSiC2
Users that are interested in MuSiC2 are comparing it to the libraries listed below
Sorting:
- Code used to process the data of the HBCA project☆32Updated 2 years ago
- ☆63Updated 2 years ago
- ☆37Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- iterative clustering pipeline of big single cell datasets.☆36Updated 5 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- Hierarchical Cell Annotation☆26Updated last year
- ☆62Updated 5 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 2 weeks ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Updated 3 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 5 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆81Updated 6 months ago
- R tools for analysis and visualization of single-cell subclustering data☆17Updated 5 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Updated 2 years ago
- ☆18Updated 4 years ago
- scWGCNA☆61Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆29Updated this week
- ☆39Updated 4 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Updated 2 years ago
- ☆40Updated 5 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆22Updated 5 months ago
- ☆33Updated 4 years ago
- ☆22Updated 2 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Updated 9 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated this week
- Robust identification of perturbed cell types in single-cell RNA-seq data☆38Updated 3 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago