Jiaxin-Fan / MuSiC2Links
cell type deconvolution for multi-condition bulk RNA-seq data
☆30Updated 3 years ago
Alternatives and similar repositories for MuSiC2
Users that are interested in MuSiC2 are comparing it to the libraries listed below
Sorting:
- ☆62Updated 2 years ago
- Code used to process the data of the HBCA project☆32Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- ☆37Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆35Updated last month
- ☆17Updated 4 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆24Updated 8 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆39Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- ☆57Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- Single-Cell Inference of Class Switch Recombination☆20Updated last month
- ☆13Updated last year
- ☆33Updated 4 years ago
- R package IReNA☆29Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- Ordering gene-expression and functional events in single-cell experiments☆27Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 3 months ago
- ☆39Updated 4 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆26Updated last year