Alternatives and similar repositories for MuSiC2

Users that are interested in MuSiC2 are comparing it to the libraries listed below

• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated 9 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆58Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆38Updated 4 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆73Updated last month
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆32Updated 9 months ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 10 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆33Updated last week
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆27Updated 4 years ago
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆17Updated last week
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated this week
• OscarGVelasco / ClusterFoldSimilarity
  Calculate cluster similarity between clusters from different single cell datasets/batches/samples.
  ☆24Updated 4 months ago
• chensujun / scRNA
  ☆32Updated 4 years ago
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆26Updated 9 months ago
• XZouProjects / scCODE
  The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
  ☆14Updated last year
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• kaifuchenlab / MEBOCOST
  ☆27Updated last week
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆23Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last week
• gxiaolab / scAllele
  ☆38Updated 2 weeks ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 10 months ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 2 years ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆57Updated 3 years ago
• WanluLiuLab / scAtlasVAE
  ☆38Updated 2 months ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago