Jiaxin-Fan / MuSiC2
cell type deconvolution for multi-condition bulk RNA-seq data
☆25Updated 3 years ago
Alternatives and similar repositories for MuSiC2:
Users that are interested in MuSiC2 are comparing it to the libraries listed below
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 6 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- ☆49Updated 9 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Code used to process the data of the HBCA project☆27Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆27Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated 3 weeks ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks