Ordering gene-expression and functional events in single-cell experiments
☆33Jul 6, 2026Updated last month
Alternatives and similar repositories for GeneSwitches
Users that are interested in GeneSwitches are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆33Aug 16, 2021Updated 5 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆16Jul 9, 2024Updated 2 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 7 months ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated last year
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 10 months ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆18Apr 7, 2024Updated 2 years ago
- A collection of color palettes inspired by plants and pop culture.☆22Sep 3, 2025Updated last year
- R package for single-cell RNA-sequencing analysis☆17Sep 30, 2025Updated 11 months ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 3 months ago
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- trajectory inference☆109Jan 27, 2025Updated last year
- Hierarchical Cell Annotation☆32Nov 17, 2024Updated last year
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 2 months ago
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- Spatial Cellular Estimator for Tumors☆66Jul 30, 2026Updated last month
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- Assessing the purity of single cell population☆156Jun 3, 2022Updated 4 years ago
- visualization tools for exon/junction coverage☆12Dec 30, 2019Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- ☆12May 24, 2024Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆41Mar 31, 2026Updated 5 months ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 2 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 4 years ago
- An R package for computing the Quaternary Dot Product Scoring Statistic for signed and unsigned causal graphs.☆10Feb 8, 2019Updated 7 years ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆37Feb 10, 2025Updated last year
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated 2 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- single cell Flux Estimation Analysis (scFEA)☆156Nov 10, 2023Updated 2 years ago
- scWGCNA☆66Nov 8, 2022Updated 3 years ago
- A robust PCA method of tumor clone and evolution inference from single-cell sequencing data.☆12May 28, 2020Updated 6 years ago
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- ☆16May 13, 2022Updated 4 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆99Nov 30, 2023Updated 2 years ago