Ordering gene-expression and functional events in single-cell experiments
☆33Jul 6, 2026Updated 3 months ago
Alternatives and similar repositories for GeneSwitches
Users that are interested in GeneSwitches are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- High-dimensional distance metrics for scRNAseq☆12Dec 14, 2021Updated 4 years ago
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆17Jun 30, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package to visualize gene expression data based on weighted kernel density estimation☆115Feb 6, 2026Updated 9 months ago
- ☆16Oct 27, 2026Updated last week
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆18Apr 7, 2024Updated 2 years ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆16Dec 1, 2025Updated 11 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆26Jan 12, 2024Updated 2 years ago
- R package for single-cell RNA-sequencing analysis☆17Sep 30, 2025Updated last year
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Large Language Models for Single-Cell RNA-Seq Annotation☆26Apr 27, 2026Updated 6 months ago
- A portable and fast single cell type identifier☆63May 12, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆136Aug 23, 2026Updated 2 months ago
- A R package for advanced single cell data viz☆74Aug 29, 2025Updated last year
- scITDG is a tool for identifying time-dependent genes in single-cell sequencing data☆17Nov 24, 2025Updated 11 months ago
- Ecotypes of Triple-Negative Breast Cancer in Response to Chemotherapy☆19Oct 28, 2026Updated last week
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆271Jul 8, 2026Updated 3 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆100Nov 30, 2023Updated 2 years ago
- Hierarchical Cell Annotation☆33Nov 17, 2024Updated last year
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆10Mar 12, 2023Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆94Oct 11, 2026Updated 3 weeks ago
- scWGCNA☆66Nov 8, 2022Updated 3 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 4 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 9 months ago
- single cell Flux Estimation Analysis (scFEA)☆158Nov 10, 2023Updated 2 years ago
- ☆14Jul 16, 2024Updated 2 years ago
- ☆45Jan 9, 2021Updated 5 years ago
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆39Jun 12, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- A package containing metrics for evaluating subpopulation identification in clusterings, embeddings, graphs and space.☆11Jan 23, 2026Updated 9 months ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- Assessing the purity of single cell population☆157Jun 3, 2022Updated 4 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆13Feb 27, 2020Updated 6 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated last year
- ☆16Jul 9, 2024Updated 2 years ago