Alternatives and similar repositories for BulkSignalR:

Users that are interested in BulkSignalR are comparing it to the libraries listed below

• elo073 / 5loclung
  Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
  ☆11Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆24Updated 3 years ago
• saeyslab / NicheNet_LiverCellAtlas
  Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022
  ☆8Updated 3 years ago
• soumelis-lab / ICELLNET
  ☆19Updated 11 months ago
• dosorio / SCORPION
  Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…
  ☆9Updated last year
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆26Updated last year
• ventolab / HECA-Human-Endometrial-Cell-Atlas
  Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.
  ☆24Updated 9 months ago
• CICAMS-Liu-lab / ECGEA
  ☆17Updated 4 years ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 5 months ago
• gustaveroussy / FG-Lab
  ☆10Updated 2 months ago
• BioBam / scMaSigPro
  Implementation of MaSigPro for scRNA-Seq Data
  ☆14Updated 8 months ago
• zgyaru / anti-PD1_ESCC
  ☆16Updated last year
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆26Updated 4 years ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• Famingzhao / NEPAL
  Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer
  ☆13Updated 4 months ago
• KPMP / Cell-State-Atlas-2022
  Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
  ☆16Updated last year
• molgenis / scRNA-seq
  ☆18Updated last year
• Siliegia / SIGMA
  R package for SIGMA, a clusterability measure for scRNA-seq data
  ☆12Updated 3 years ago
• XSLiuLab / TCfinder
  ☆9Updated 7 months ago
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆16Updated 11 months ago
• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆17Updated 6 months ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆18Updated 2 weeks ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆20Updated 3 years ago
• qingnanl / gsdensity
  ☆9Updated 9 months ago
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated last year
• shanzha9 / siAgeModel
  ☆12Updated 8 months ago