jcolinge / BulkSignalR
BulkSignalR
☆15Updated 8 months ago
Alternatives and similar repositories for BulkSignalR:
Users that are interested in BulkSignalR are comparing it to the libraries listed below
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- R tools for analysis and visualization of single-cell subclustering data☆15Updated 9 months ago
- ☆16Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆29Updated 2 months ago
- ☆15Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 6 months ago
- Code used to process the data of the HBCA project☆22Updated 11 months ago
- Implementation of MaSigPro for scRNA-Seq Data☆14Updated 6 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆13Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆54Updated 3 months ago
- ☆15Updated last year
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆22Updated last year
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆8Updated 3 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆23Updated 7 months ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆13Updated last month
- ☆15Updated 3 years ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆14Updated 2 weeks ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆14Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Waelchli-lab / Single-cell-atlas-of-the-human-brain-vasculature-accross-development-adulthood-and-diseaseMolecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆11Updated 6 months ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆19Updated 2 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- ☆19Updated 8 months ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆11Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- ☆11Updated 10 months ago
- ☆17Updated 3 years ago