Alternatives and similar repositories for BulkSignalR:

Users that are interested in BulkSignalR are comparing it to the libraries listed below

• elo073 / 5loclung
  Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
  ☆12Updated last year
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• zgyaru / anti-PD1_ESCC
  ☆17Updated last year
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆27Updated last year
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆16Updated last year
• ventolab / Human-Endometrial-Cell-Atlas_HECA
  Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.
  ☆24Updated 10 months ago
• soumelis-lab / ICELLNET
  ☆20Updated last year
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆21Updated 2 years ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆17Updated 7 months ago
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• gustaveroussy / FG-Lab
  ☆10Updated 3 months ago
• Coolgenome / GastricCancer
  ☆11Updated last year
• qingnanl / gsdensity
  ☆9Updated 9 months ago
• miccec / yaGST
  ☆13Updated 7 years ago
• yunshun / HumanBreast10X
  ☆26Updated 3 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆25Updated 3 years ago
• olapuentesantana / easier
  R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq
  ☆14Updated 4 months ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 2 months ago
• mbourgey / scRNA_GBM
  analysis script for GBM single cell RNA seq data
  ☆18Updated 3 years ago
• Famingzhao / NEPAL
  Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer
  ☆13Updated 5 months ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated last year
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆11Updated 4 years ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 6 months ago
• Siliegia / SIGMA
  R package for SIGMA, a clusterability measure for scRNA-seq data
  ☆12Updated 3 years ago
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆14Updated 5 months ago