wanglabtongji / SpaceScannerLinks
Scanner of specific spatial patterns in tissues
☆13Updated 2 years ago
Alternatives and similar repositories for SpaceScanner
Users that are interested in SpaceScanner are comparing it to the libraries listed below
Sorting:
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 3 months ago
- ☆9Updated 10 months ago
- Code for the spatial transcriptomic paper on IPF lungs☆17Updated 10 months ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- ☆11Updated last year
- ☆16Updated last year
- Spatial transcriptomics of heart tissue☆21Updated 2 years ago
- ☆17Updated last year
- Code for spatial subclone paper☆11Updated 4 months ago
- ☆21Updated 5 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- ☆15Updated 7 months ago
- ☆12Updated last year
- ☆18Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆14Updated 6 months ago
- ☆17Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 3 months ago
- ☆13Updated 7 months ago
- ☆12Updated last year
- Publically accessible code for DIISCO method☆10Updated 7 months ago
- ☆15Updated last year
- Computational pipeline to process EasySci-RNA data.☆20Updated last year
- Lung cancer 10X analysis☆11Updated 4 years ago
- Integration of gut cell atlases☆25Updated 3 months ago
- ☆19Updated 2 weeks ago
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆12Updated 2 years ago
- ☆27Updated last year
- ☆16Updated 4 years ago