wanglabtongji / SpaceScannerLinks
Scanner of specific spatial patterns in tissues
☆13Updated 3 years ago
Alternatives and similar repositories for SpaceScanner
Users that are interested in SpaceScanner are comparing it to the libraries listed below
Sorting:
- Code for spatial subclone paper☆12Updated 7 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- ☆21Updated 2 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆14Updated last month
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 5 months ago
- ☆11Updated last year
- ☆16Updated last year
- ☆19Updated 3 years ago
- ☆21Updated 8 months ago
- Spatial transcriptomics of heart tissue☆22Updated 3 years ago
- ☆27Updated last week
- ☆19Updated 6 months ago
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆12Updated 2 years ago
- Code for the spatial transcriptomic paper on IPF lungs☆19Updated last year
- Integration of gut cell atlases☆27Updated 6 months ago
- ☆31Updated last year
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆28Updated last year
- scRNA-seq analysis of EENT-ONB☆22Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆16Updated 8 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆13Updated 3 weeks ago
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆12Updated last year
- ☆13Updated 9 months ago
- ☆19Updated 9 months ago
- Code used to process the data of the HBCA project☆30Updated last year
- ☆12Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 6 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆19Updated 2 years ago
- ☆29Updated last month
- ☆20Updated last year