Alternatives and similar repositories for SpaceScanner

Users that are interested in SpaceScanner are comparing it to the libraries listed below

• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 7 months ago
• ventolab / Human-Gonadal-Development-Atlas_HGDA
  ☆21Updated 10 months ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 3 years ago
• ding-lab / ST_subclone_publication
  Code for spatial subclone paper
  ☆13Updated 9 months ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆25Updated 3 years ago
• kaifuchenlab / MEBOCOST
  ☆28Updated last week
• Jonyyqn / scMalignantFinder
  scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…
  ☆15Updated 3 weeks ago
• AndersonHu85 / ccRCC_multiomics
  ☆17Updated 2 years ago
• sdentro / copykat_pipeline
  ☆13Updated last year
• YiLab-SC / scHolography
  ☆11Updated last year
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆20Updated last year
• Coolgenome / PDAC
  ☆21Updated 8 months ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆28Updated 8 months ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 8 months ago
• maximemeylan / Meylan_et_al_2022
  ☆20Updated 3 years ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆28Updated last year
• Banovich-Lab / Spatial_PF
  ☆31Updated last week
• azizilab / DIISCO_public
  Publically accessible code for DIISCO method
  ☆12Updated 2 weeks ago
• Chuxj / CRC-atlas
  ☆31Updated last year
• xmuyulab / ims_gene_signature
  Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma
  ☆12Updated 2 years ago
• guangchunhan / LUAD_Code
  ☆23Updated 2 years ago
• yunguan-wang / Spacia
  ☆30Updated 5 months ago
• zhang-bin-98 / A-spatial-transcriptome-landscape-of-mouse-aging
  ☆15Updated 11 months ago
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆52Updated 9 months ago
• SeadonXing / SSN_scRNA-seq
  The codes and files for the study of subsolid nodules (SSN).
  ☆15Updated 5 years ago
• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆20Updated last year
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆13Updated last year
• ding-lab / mushroom
  A computational tool for identification of 3D multi-modal spatial neighborhoods
  ☆14Updated 2 months ago