raphael-group / GASTONLinks
GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
☆70Updated last month
Alternatives and similar repositories for GASTON
Users that are interested in GASTON are comparing it to the libraries listed below
Sorting:
- ☆52Updated 3 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 10 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆29Updated last year
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago
- Code used to benchmark Xenium☆73Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Updated 4 years ago
- ☆40Updated 3 years ago
- CAST package☆42Updated last year
- Bayesian Analytics for Spatial Segmentation☆30Updated 8 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 4 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 11 months ago
- ☆34Updated 2 months ago
- Spatially resolved transcriptomic analysis☆64Updated 3 years ago
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆60Updated 2 weeks ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆147Updated last month
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 2 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆45Updated 4 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆79Updated 11 months ago
- ☆57Updated last week
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆71Updated 7 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 11 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- List of Spatial Transcriptomics related Tools organized per category☆101Updated last week
- ☆53Updated 2 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆85Updated 11 months ago
- ☆32Updated 10 months ago