GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
☆76Dec 1, 2025Updated 10 months ago
Alternatives and similar repositories for GASTON
Users that are interested in GASTON are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- clustering method for single-cell transcriptomics data☆11Oct 11, 2026Updated 2 weeks ago
- ☆12May 24, 2024Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆94Oct 11, 2026Updated 2 weeks ago
- Python playground for cell-type-specific biology☆14Aug 25, 2026Updated 2 months ago
- ☆57Sep 2, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆52Oct 22, 2025Updated last year
- Map large-scale single cells to the exact spatial locations☆21Jun 9, 2026Updated 4 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆69Mar 18, 2024Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- scTM: A package for topic modelling in transcriptomics data☆28May 1, 2024Updated 2 years ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated 5 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆47Feb 19, 2026Updated 8 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆32Sep 6, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆491Jan 22, 2026Updated 9 months ago
- ☆17Sep 29, 2023Updated 3 years ago
- ☆175Dec 20, 2024Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆52Aug 18, 2025Updated last year
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- End-to-end analysis of spatial multi-omics data☆133Updated this week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- ☆13Sep 30, 2024Updated 2 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆40Sep 2, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆167Mar 20, 2026Updated 7 months ago
- ☆31Apr 15, 2026Updated 6 months ago
- Biwhitened PCA☆15Mar 18, 2026Updated 7 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆203Updated this week
- End-to-end model for cell segmentation and classification☆23Sep 13, 2026Updated last month
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆18Dec 7, 2025Updated 10 months ago
- Profile purification of single-cell spatial transcriptomics data☆68Jun 29, 2026Updated 4 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆93Mar 19, 2026Updated 7 months ago
- Spatially-aware quality control for spatial transcriptomics☆17Oct 16, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Differential spatial enrichment across conditions☆31Jul 14, 2026Updated 3 months ago
- ☆10Mar 12, 2023Updated 3 years ago
- EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.☆17Oct 7, 2026Updated 3 weeks ago
- High dimensional weighted gene co-expression network analysis☆493Jun 16, 2026Updated 4 months ago
- ☆15Oct 24, 2025Updated last year
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆23May 28, 2026Updated 5 months ago
- BANKSY: spatial clustering☆170Updated this week