GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
☆72Dec 1, 2025Updated 7 months ago
Alternatives and similar repositories for GASTON
Users that are interested in GASTON are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Sep 29, 2023Updated 2 years ago
- scTM: A package for topic modelling in transcriptomics data☆26May 1, 2024Updated 2 years ago
- ☆53Oct 9, 2025Updated 8 months ago
- ☆13Sep 30, 2024Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆42Mar 2, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Spot pseudo-Imager on top of histology☆50Dec 12, 2025Updated 6 months ago
- Biwhitened PCA☆15Mar 18, 2026Updated 3 months ago
- Python playground for cell-type-specific biology☆14Jun 7, 2026Updated 3 weeks ago
- ☆15Oct 24, 2025Updated 8 months ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆16Dec 5, 2025Updated 6 months ago
- ☆63Jul 23, 2024Updated last year
- ☆12May 24, 2024Updated 2 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 7 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆467Jan 22, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆50Aug 18, 2025Updated 10 months ago
- Map large-scale single cells to the exact spatial locations☆21Jun 9, 2026Updated 3 weeks ago
- A Toolbox for Spatial Transcriptomics Analysis☆169May 6, 2025Updated last year
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- ☆61Feb 14, 2025Updated last year
- ☆28Jun 4, 2023Updated 3 years ago
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆191Aug 12, 2025Updated 10 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆436May 11, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 10 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 7 months ago
- BANKSY: spatial clustering☆152May 30, 2026Updated last month
- codes for article☆18Jan 14, 2026Updated 5 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆65Mar 18, 2024Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆33Feb 28, 2022Updated 4 years ago
- Developmental Spatiotemporal Optimal Transport☆14Mar 19, 2025Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆21Sep 12, 2023Updated 2 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- ☆21Feb 5, 2025Updated last year
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated last month
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 11 months ago
- SCENIC+ analyses☆18Sep 26, 2023Updated 2 years ago
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆115Jul 4, 2025Updated 11 months ago
- ☆151Mar 20, 2026Updated 3 months ago