GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
☆74Dec 1, 2025Updated 7 months ago
Alternatives and similar repositories for GASTON
Users that are interested in GASTON are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scTM: A package for topic modelling in transcriptomics data☆26May 1, 2024Updated 2 years ago
- Python playground for cell-type-specific biology☆14Jul 10, 2026Updated last week
- Map large-scale single cells to the exact spatial locations☆21Jun 9, 2026Updated last month
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆67Mar 18, 2024Updated 2 years ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆50Oct 22, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆12May 24, 2024Updated 2 years ago
- ☆53Oct 9, 2025Updated 9 months ago
- ☆16Sep 29, 2023Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆472Jan 22, 2026Updated 5 months ago
- End-to-end analysis of spatial multi-omics data☆119May 15, 2026Updated 2 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆50Aug 18, 2025Updated 11 months ago
- ☆13Sep 30, 2024Updated last year
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 11 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆20May 28, 2026Updated last month
- ☆29Apr 15, 2026Updated 3 months ago
- Biwhitened PCA☆15Mar 18, 2026Updated 4 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆87Mar 20, 2025Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- End-to-end model for cell segmentation and classification☆23Jan 13, 2025Updated last year
- EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.☆15Jun 26, 2026Updated 3 weeks ago
- ☆169Dec 20, 2024Updated last year
- ☆15Oct 24, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆181Jul 13, 2026Updated last week
- Differential spatial enrichment across conditions☆28Jul 14, 2026Updated last week
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated last month
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆151Feb 20, 2025Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆46Feb 19, 2026Updated 5 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- High dimensional weighted gene co-expression network analysis☆487Jun 16, 2026Updated last month
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 3 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆194Aug 12, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Implementation of CellNEST method☆70Jun 23, 2026Updated 3 weeks ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆38Apr 30, 2025Updated last year
- ☆14May 3, 2026Updated 2 months ago
- cell type specific, trait-associated gene regulation☆30Mar 31, 2025Updated last year
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated 11 months ago
- ☆63Jul 23, 2024Updated last year
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 8 months ago