single-cell Contamination Detection and Correction
☆18Jan 15, 2025Updated last year
Alternatives and similar repositories for scCDC
Users that are interested in scCDC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An end-to-end Single-Cell Omics analysis Pipeline designed to facilitate comprehensive analysis and exploration of single-cell omics data…☆233Updated this week
- a deep generative model for single-cell survival analysis☆25Dec 2, 2025Updated 5 months ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆19Mar 7, 2024Updated 2 years ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 8 months ago
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆44Apr 1, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 8 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated last year
- The official implementation for "SANGO".☆11Mar 17, 2024Updated 2 years ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆28Sep 30, 2025Updated 7 months ago
- ☆11Apr 25, 2026Updated 2 weeks ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51Apr 29, 2026Updated last week
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆17Mar 17, 2026Updated last month
- A Guide to the Analysis of Spatial Transcriptomics☆12Jul 29, 2024Updated last year
- ☆64Apr 22, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to visualize gene expression data based on weighted kernel density estimation☆113Feb 6, 2026Updated 3 months ago
- ☆14Dec 15, 2019Updated 6 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆86Apr 21, 2025Updated last year
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 7 months ago
- R code used to analyze single cell PDAC data☆43Jun 29, 2024Updated last year
- ☆12Apr 16, 2026Updated 3 weeks ago
- Pan-Cancer Single Cell Classifier☆85May 30, 2024Updated last year
- Paired Insertion Counting for snATAC-seq data☆19Mar 15, 2026Updated last month
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆13Mar 7, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- Data-driven Network-based Bayesian Inference of Drivers☆48Aug 18, 2025Updated 8 months ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Nov 21, 2023Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 2 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆169Apr 29, 2026Updated last week
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 📦R包：Make TCGA download and prepare easy!☆154Sep 19, 2025Updated 7 months ago
- ☆12Dec 4, 2023Updated 2 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆61Aug 17, 2024Updated last year
- ☆15Aug 11, 2025Updated 9 months ago
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 2 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago