☆29Jun 4, 2023Updated 3 years ago
Alternatives and similar repositories for SpaGene
Users that are interested in SpaGene are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆23May 13, 2026Updated 5 months ago
- Spatial Cellular Estimator for Tumors☆67Sep 27, 2026Updated last month
- Secreted Protein Activity Inference☆34Jul 31, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆20May 26, 2025Updated last year
- ☆54Mar 7, 2023Updated 3 years ago
- ☆33May 4, 2025Updated last year
- ☆106May 4, 2026Updated 5 months ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆19Sep 25, 2026Updated last month
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆11Dec 13, 2022Updated 3 years ago
- ☆23Dec 23, 2024Updated last year
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆44Mar 30, 2025Updated last year
- ☆20May 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆167Mar 20, 2026Updated 7 months ago
- ☆37Jun 15, 2026Updated 4 months ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆25Jul 14, 2026Updated 3 months ago
- ☆12Sep 29, 2026Updated last month
- EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.☆17Oct 7, 2026Updated 3 weeks ago
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆20Jan 16, 2026Updated 9 months ago
- ☆13Sep 30, 2024Updated 2 years ago
- R implementation of GeneTrajectory☆72May 9, 2026Updated 5 months ago
- mapping somatic variants to cell barcodes in scRNA-Seq data☆11Sep 21, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Hotspot cluster distance analysis in spatial transcriptomic data☆38Feb 10, 2025Updated last year
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- The scripts used for the analyses in TOME project☆26Nov 28, 2025Updated 11 months ago
- SpotGF: Denoising Spatially Resolved Transcriptomics Data Using an Optimal Transport-Based Gene Filtering Algorithm☆22Apr 8, 2025Updated last year
- Local Spatial Gradient Inference☆12Jul 28, 2025Updated last year
- ☆152Jun 25, 2026Updated 4 months ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆25Dec 9, 2024Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆93Mar 19, 2026Updated 7 months ago
- ☆22Jul 22, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆34Jul 7, 2026Updated 3 months ago
- scTM: A package for topic modelling in transcriptomics data☆28May 1, 2024Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- ☆14Jun 1, 2026Updated 5 months ago
- Bayesian Analytics for Spatial Segmentation☆34May 4, 2025Updated last year
- ☆15Sep 23, 2025Updated last year
- ☆24Jan 10, 2025Updated last year