liuqivandy / SpaGeneLinks
☆22Updated last year
Alternatives and similar repositories for SpaGene
Users that are interested in SpaGene are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆19Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 3 months ago
- cell type specific, trait-associated gene regulation☆26Updated 2 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆31Updated 9 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 7 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated 11 months ago
- ☆10Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated last month
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 4 months ago
- ☆32Updated 4 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).☆12Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆13Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆65Updated 7 months ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated last month
- Single-cell Orientation Tracing☆21Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆11Updated 9 months ago
- Data analysis for the moscot-framework project☆12Updated 5 months ago