liuqivandy / SpaGene
☆17Updated last year
Related projects ⓘ
Alternatives and complementary repositories for SpaGene
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 9 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- ☆47Updated last year
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆17Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆26Updated 2 months ago
- Ordering gene-expression and functional events in single-cell experiments☆18Updated 8 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆20Updated 2 weeks ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- Python implementation of Gene Trajectory☆20Updated 2 months ago
- Accurate and fast cell marker gene identification with COSG☆38Updated last year
- ☆40Updated 6 months ago
- Spatial transcriptomics of heart tissue☆17Updated 2 years ago
- ☆30Updated 6 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆25Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆20Updated 3 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆21Updated 2 months ago
- ☆12Updated 2 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆14Updated last year
- Spatial Single Cell transcriptomic library☆17Updated 8 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆14Updated 2 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated 10 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆15Updated last month
- ☆20Updated last year