Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
☆79Jan 17, 2025Updated last year
Alternatives and similar repositories for SpaTalk
Users that are interested in SpaTalk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- ☆140Jun 25, 2026Updated 3 weeks ago
- ☆136Feb 11, 2024Updated 2 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆23Sep 20, 2022Updated 3 years ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23May 20, 2023Updated 3 years ago
- Spatial Cellular Estimator for Tumors☆65Updated this week
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆245Aug 7, 2024Updated last year
- ☆133Mar 27, 2022Updated 4 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆67Mar 18, 2024Updated 2 years ago
- ☆12May 24, 2024Updated 2 years ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆450Jul 13, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆151Feb 20, 2025Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆253Jul 12, 2026Updated last week
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated last year
- SCassist : An AI Based Workflow Assistant for Single-Cell Analysis☆33Aug 22, 2025Updated 10 months ago
- Spatial omics analysis toolbox☆383Jun 2, 2026Updated last month
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆29Sep 6, 2024Updated last year
- ☆54Mar 7, 2023Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆31Aug 16, 2021Updated 4 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆243May 8, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Toolbox for Spatial Transcriptomics Analysis☆171May 6, 2025Updated last year
- EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.☆15Jun 26, 2026Updated 3 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- marker-based purification of cell types from single-cell RNA-seq datasets☆145Mar 13, 2026Updated 4 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆194Aug 12, 2025Updated 11 months ago
- ☆28Jun 4, 2023Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Mar 28, 2026Updated 3 months ago
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 4 years ago
- ☆34Feb 25, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated 2 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 3 weeks ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated last year
- Spatial direct messaging detected by bivariate Moran☆33Jul 16, 2025Updated last year
- BANKSY: spatial clustering☆157May 30, 2026Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphs☆439May 11, 2026Updated 2 months ago