Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
☆76Jan 17, 2025Updated last year
Alternatives and similar repositories for SpaTalk
Users that are interested in SpaTalk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆137Apr 24, 2024Updated 2 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- ☆132Feb 11, 2024Updated 2 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Spot pseudo-Imager on top of histology☆49Dec 12, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆22Sep 20, 2022Updated 3 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23May 20, 2023Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆63Updated this week
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- ☆129Mar 27, 2022Updated 4 years ago
- ☆11May 24, 2024Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆239Aug 7, 2024Updated last year
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆64Mar 18, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆429Updated this week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆141Feb 20, 2025Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆29Sep 6, 2024Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆245Apr 17, 2026Updated last week
- Spatial omics analysis toolbox☆372Updated this week
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆30Aug 16, 2021Updated 4 years ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 10 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆166May 6, 2025Updated 11 months ago
- SCassist : An AI Based Workflow Assistant for Single-Cell Analysis☆31Aug 22, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆54Mar 7, 2023Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆240May 8, 2023Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆639Nov 12, 2025Updated 5 months ago
- ☆27Jun 4, 2023Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated last month
- ☆34Feb 25, 2025Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆185Aug 12, 2025Updated 8 months ago
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 3 years ago
- Join subcellular Visium HD bins into cells☆140Nov 4, 2025Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Mar 28, 2026Updated last month
- Some tools for plotting single-cell data☆178May 17, 2025Updated 11 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Mar 16, 2026Updated last month
- BANKSY: spatial clustering☆141Oct 15, 2025Updated 6 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆428Updated this week
- Spatial direct messaging detected by bivariate Moran☆31Jul 16, 2025Updated 9 months ago
- R package for pathway analysis in scRNA-seq data☆79Aug 17, 2024Updated last year