Ensembl / plant-scriptsLinks
Scripting analyses of genomes in Ensembl Plants
☆42Updated last month
Alternatives and similar repositories for plant-scripts
Users that are interested in plant-scripts are comparing it to the libraries listed below
Sorting:
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆34Updated this week
- BITACORA: A Bioinformatics tool for gene family annotation☆53Updated last month
- NLR annotation tool☆35Updated last year
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Updated 4 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Updated last year
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- paml documentation and tutorials☆68Updated 3 weeks ago
- Neural network classification of TE☆97Updated 3 months ago
- ☆45Updated 9 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 4 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆62Updated last month
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Show pangenome graphs in an easy way☆57Updated 6 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆41Updated last week
- Computational Analysis of Gene Expression Evolution☆45Updated 5 months ago
- perSVade: personalized Structural Variation detection☆40Updated 2 weeks ago
- ☆68Updated this week
- k-mer learning materials☆83Updated 11 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆120Updated 2 months ago
- methods for orphan gene prediction paper optimization☆25Updated 4 years ago
- Portable solution to generate genome alignment chains using lastz☆60Updated last month
- Annotation helper tool for the manual curation of transposable element consensus sequences☆53Updated 11 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆68Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago