Ensembl / plant-scriptsLinks
Scripting analyses of genomes in Ensembl Plants
☆40Updated this week
Alternatives and similar repositories for plant-scripts
Users that are interested in plant-scripts are comparing it to the libraries listed below
Sorting:
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 5 months ago
- Plant genome assembly and annotation pipeline using snakemake☆47Updated 4 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 3 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆49Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated 3 weeks ago
- NLR annotation tool☆32Updated last year
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆57Updated last week
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆43Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆68Updated 4 years ago
- read and analyse RepeatMasker output☆25Updated 2 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- ☆44Updated 8 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- paml documentation and tutorials☆61Updated 4 months ago
- ☆44Updated 2 years ago
- Molecular convergence detection☆39Updated 3 months ago
- Neural network classification of TE☆95Updated 3 months ago
- perSVade: personalized Structural Variation detection☆40Updated last week
- meta-pipeline for repetitive element de-fragmentation and annotation☆26Updated 4 years ago
- Genome Annotation Pipeline☆36Updated last year
- ☆37Updated last month
- Portable solution to generate genome alignment chains using lastz☆58Updated 3 months ago
- ☆39Updated 10 months ago