Ensembl / plant-scripts

Related projects: ⓘ

• slt666666 / NLRtracker
  NLR annotation tool
  ☆22Updated 6 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆47Updated last year
• sagnikbanerjee15 / Finder
  A fully automated gene annotator from RNA-Seq expression data
  ☆53Updated last year
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆81Updated last year
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆46Updated 3 months ago
• PalMuc / TransPi
  TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
  ☆26Updated 2 years ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 3 weeks ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆64Updated 6 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆31Updated last year
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆43Updated last year
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆56Updated last year
• mapleforest / HaploMerger2
  ☆41Updated 7 years ago
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆34Updated 6 years ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆55Updated last year
• JanaSperschneider / EffectorP-3.0
  Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
  ☆16Updated 2 years ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆45Updated 7 months ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆52Updated 2 years ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆31Updated 5 years ago
• kjenike / panagram
  ☆56Updated 2 months ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆34Updated this week
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆44Updated 2 weeks ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆46Updated 5 months ago
• niccw / repeatcraftp
  meta-pipeline for repetitive element de-fragmentation and annotation
  ☆23Updated 3 years ago
• bichangwei / PMAT
  An efficient assembly tool for plant mitochondrial genome
  ☆26Updated 3 months ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆32Updated last year
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆43Updated 2 months ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆36Updated 3 months ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆40Updated 4 months ago
• DessimozLab / OMArk
  ☆53Updated 5 months ago