Alternatives and similar repositories for graph_peak_caller

Users that are interested in graph_peak_caller are comparing it to the libraries listed below

• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆59Updated 4 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆57Updated last year
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 6 months ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆38Updated 9 years ago
• lorinanthony / MAPIT
  Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
  ☆18Updated 3 years ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆64Updated last year
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆31Updated 2 weeks ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• MeHelmy / princess
  ☆84Updated 10 months ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆36Updated 6 years ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆52Updated 10 months ago
• PacificBiosciences / pbfusion
  ☆23Updated 8 months ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆55Updated 4 years ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆39Updated 2 months ago
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆41Updated 6 months ago
• cortes-ciriano-lab / ReConPlot
  ☆24Updated last year
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated last year
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆34Updated 6 months ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆53Updated 10 months ago
• farhangus / Sniffles2_plot
  ☆32Updated last year
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 5 years ago
• maickrau / ribotin
  ☆38Updated 3 weeks ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆24Updated 2 years ago
• WGLab / LongReadSum
  ☆27Updated 4 months ago
• ConesaLab / SQANTI
  ☆14Updated 2 years ago