uio-bmi / graph_peak_callerLinks
ChIP-seq peak caller for reads mapped to a graph-based reference genome
☆21Updated 9 months ago
Alternatives and similar repositories for graph_peak_caller
Users that are interested in graph_peak_caller are comparing it to the libraries listed below
Sorting:
- Methylation analysis pipeline for genome graph☆12Updated 2 weeks ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last week
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- ☆18Updated last month
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Working space for the GIAB TR benchmarking project☆21Updated 7 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆40Updated 3 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 8 months ago
- Structural variant merging tool☆50Updated 9 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 2 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆29Updated 3 weeks ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆33Updated 6 years ago
- ☆14Updated 9 months ago
- ☆19Updated 2 years ago
- Reconstruction of focal amplifications with long reads☆21Updated last week
- Variant annotation and merging pipeline☆34Updated last week
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- Algorithm to detect germline and de novo transposon insertions☆28Updated last month
- ☆42Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 11 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago