PacificBiosciences / actc
Align subreads to ccs reads
☆13Updated last year
Alternatives and similar repositories for actc:
Users that are interested in actc are comparing it to the libraries listed below
- recompute GFA link overlaps☆25Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 5 months ago
- ☆17Updated 2 weeks ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- convert variation graph alignments to coverage maps over nodes☆23Updated 2 months ago
- ☆17Updated 4 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Prefix-renaming FASTA records really fast.☆17Updated 10 months ago
- Utilities to detect and profile `het-kmers`☆11Updated 8 months ago
- Reference bias measuring toolkit☆18Updated last week
- ☆32Updated 2 years ago
- A K-mer classifier for HiFi reads☆9Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- the pangenome graph evaluator☆26Updated 4 years ago
- General purpose utility related to GAF files☆24Updated last week
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 10 months ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- ☆16Updated 3 years ago
- Convert HAL to VG☆22Updated 8 months ago
- ☆19Updated 4 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 7 months ago