PacificBiosciences / actcLinks
Align subreads to ccs reads
☆14Updated 3 months ago
Alternatives and similar repositories for actc
Users that are interested in actc are comparing it to the libraries listed below
Sorting:
- recompute GFA link overlaps☆25Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 9 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 2 months ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Differential k-mer analysis☆37Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- ☆17Updated 4 years ago
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- ☆32Updated 2 years ago
- the pangenome graph evaluator☆28Updated 4 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Reference bias measuring toolkit☆18Updated 5 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- General purpose utility related to GAF files☆29Updated last week
- ☆25Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- Convert HAL to VG☆22Updated last year
- ☆21Updated last week
- extract MSAs from genome variation graphs☆33Updated 4 years ago