Alternatives and similar repositories for TheHumanPangenome:

Users that are interested in TheHumanPangenome are comparing it to the libraries listed below

• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆60Updated 3 years ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆100Updated last week
• phasegenomics / FALCON-Phase
  FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
  ☆74Updated 4 years ago
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆51Updated 5 years ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆117Updated 2 weeks ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 9 months ago
• human-pangenomics / HPP_Year1_Data_Freeze_v1.0
  ☆57Updated 3 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 weeks ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆78Updated last year
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆74Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆113Updated 3 months ago
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆88Updated 3 years ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆105Updated this week
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• Illumina / Polaris
  Data and information about the Polaris study
  ☆53Updated 5 years ago
• BioInf-Wuerzburg / proovread
  PacBio hybrid error correction through iterative short read consensus
  ☆60Updated 5 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆111Updated 3 months ago
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆112Updated 5 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆71Updated 3 years ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆106Updated 2 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆79Updated 2 weeks ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆72Updated 3 years ago
• Kingsford-Group / scallop
  Scallop is a reference-based transcriptome assembler for RNA-seq
  ☆90Updated 3 years ago
• LooseLab / bulkvis
  ☆47Updated 4 months ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆43Updated 2 years ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆106Updated 9 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 6 months ago
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆65Updated 8 months ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆65Updated last year