A Strategy for Building and Using a Human Reference Pangenome
☆70May 29, 2020Updated 5 years ago
Alternatives and similar repositories for TheHumanPangenome
Users that are interested in TheHumanPangenome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Nov 1, 2019Updated 6 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Apr 15, 2020Updated 5 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Sep 6, 2025Updated 6 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- alignment to variation graph inducer☆158Updated this week
- Genome inference from a population reference graph☆96Apr 1, 2025Updated 11 months ago
- ☆15Mar 9, 2018Updated 8 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 6 years ago
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆46Feb 23, 2021Updated 5 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- GBWT-based handle graph☆31Mar 17, 2026Updated last week
- Convert HAL to VG☆23Aug 12, 2024Updated last year
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- ☆286Dec 29, 2025Updated 3 months ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 7 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆47Jun 7, 2023Updated 2 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆147Mar 19, 2026Updated last week
- Differential quantification of alternative splicing events on spliced pangenome graphs☆15Jan 30, 2026Updated 2 months ago
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- the pangenome graph builder☆488Mar 14, 2026Updated 2 weeks ago
- Show pangenome graphs in an easy way☆59Aug 7, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 2 months ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago