NCBI-Hackathons / TheHumanPangenome

Related projects: ⓘ

• LooseLab / bulkvis
  ☆46Updated last year
• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆60Updated 3 years ago
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆51Updated 4 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆76Updated 5 months ago
• Kingsford-Group / scallop
  Scallop is a reference-based transcriptome assembler for RNA-seq
  ☆88Updated 3 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆106Updated 7 months ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 3 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆78Updated 2 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆95Updated last year
• BioInf-Wuerzburg / proovread
  PacBio hybrid error correction through iterative short read consensus
  ☆60Updated 5 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 9 months ago
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆101Updated 2 years ago
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 3 years ago
• PapenfussLab / sv_benchmark
  Comprehensive benchmark of structural variant callers
  ☆42Updated 3 years ago
• iqbal-lab-org / gramtools
  Genome inference from a population reference graph
  ☆92Updated last year
• bcgsc / LINKS
  ⛓ Long Interval Nucleotide K-mer Scaffolder
  ☆72Updated 9 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆99Updated this week
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆89Updated 4 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆65Updated last year
• EI-CoreBioinformatics / mikado
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…
  ☆93Updated 3 months ago
• genome-in-a-bottle / genome-stratifications
  Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…
  ☆75Updated last year
• human-pangenomics / hpp_pangenome_resources
  ☆94Updated 11 months ago
• phasegenomics / FALCON-Phase
  FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
  ☆73Updated 3 years ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆98Updated 4 months ago
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆113Updated 5 years ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆135Updated 3 months ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆76Updated 9 months ago
• epi2me-labs / tutorials
  ☆45Updated this week
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆52Updated last year
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 3 years ago