compbiol / CAMSALinks
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
☆25Updated 5 years ago
Alternatives and similar repositories for CAMSA
Users that are interested in CAMSA are comparing it to the libraries listed below
Sorting:
- Improved Phased Assembler☆28Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- Haploidy and Size Completeness Estimation☆14Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- ☆31Updated 6 years ago
- A comparative genome scaffolding tool☆16Updated 7 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Scaffolding with Ultralong Reads☆15Updated 5 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- Segmental duplication detection tool☆16Updated 3 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Improved long-read assembly by preserving contained reads☆30Updated last year
- ☆29Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- Convert HAL to VG☆23Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- FastK based version of Merqury☆30Updated 2 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last month