mcsimenc / PhyLTRLinks
Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
☆18Updated 3 years ago
Alternatives and similar repositories for PhyLTR
Users that are interested in PhyLTR are comparing it to the libraries listed below
Sorting:
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last month
- Genome alignment and synteny plots☆33Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆36Updated last month
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- ☆17Updated 5 months ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- ☆28Updated last year
- Consensus genome annotation using OMA☆27Updated 5 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆25Updated last year
- A box of genomics tools☆21Updated 5 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- COsine SImilarity-based Genotyper using pangenomes☆23Updated this week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- A comparative genome scaffolding tool☆16Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago