mcsimenc / PhyLTRLinks
Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
☆18Updated 2 years ago
Alternatives and similar repositories for PhyLTR
Users that are interested in PhyLTR are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆31Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 5 months ago
- A box of genomics tools☆21Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 6 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆23Updated last year
- parallelLastz: Running Lastz in parallel☆16Updated 11 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 11 months ago
- ☆15Updated 4 years ago
- ☆21Updated this week
- Improved Phased Assembler☆28Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- ☆11Updated 10 years ago
- ☆27Updated this week
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 3 years ago
- Long read QC, assembly and scaffolding pipeline☆13Updated 5 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆16Updated last month
- Chromosome-level synteny plotting using orthologous regions☆29Updated 11 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago