Taxon-aware analysis of clustered protein sequences
☆31Jul 1, 2024Updated last year
Alternatives and similar repositories for kinfin
Users that are interested in kinfin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- A box of genomics tools☆22Aug 26, 2020Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆29Feb 23, 2026Updated 3 weeks ago
- ☆10Jun 13, 2020Updated 5 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 6 months ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆109Jan 30, 2026Updated last month
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- Genome Scripts used in fungal comparative genomics☆65Sep 25, 2020Updated 5 years ago
- PASA software☆199Feb 12, 2025Updated last year
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆27Nov 21, 2025Updated 4 months ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- OpenGL Powered Pretext Contact Map Viewer☆56Mar 16, 2026Updated last week
- Automatic evaluation of HGTs☆30Jan 31, 2025Updated last year
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Nov 14, 2025Updated 4 months ago
- ☆16Jan 5, 2018Updated 8 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆61Oct 27, 2023Updated 2 years ago
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated 2 months ago
- Version 5 of the CAFE phylogenetics software☆164Mar 16, 2026Updated last week
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 9 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 6 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆292Feb 25, 2026Updated 3 weeks ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- A genome completeness evaluation tool based on miniprot☆237Sep 18, 2025Updated 6 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆119Apr 7, 2021Updated 4 years ago
- A program for divvying or partially filtering multiple sequence alignments☆27Oct 14, 2019Updated 6 years ago