zhutao1009 / dndsLinks
Calculate the dn/ds (also pn and ps) value of cds
☆13Updated 5 years ago
Alternatives and similar repositories for dnds
Users that are interested in dnds are comparing it to the libraries listed below
Sorting:
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 6 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 4 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 11 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last week
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆19Updated last year
- Yet another Hi-C scaffolding tool☆21Updated 8 months ago
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- ☆25Updated 10 months ago
- Gene Family Annotation Workflow☆11Updated last year
- Domain based annotation of transposable elements☆19Updated 2 months ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 9 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆15Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆23Updated this week
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 3 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆38Updated last month
- ☆15Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆28Updated 3 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 5 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 3 months ago
- A Swiss-Army-Knife for Bioinformaticians☆12Updated 3 weeks ago
- ☆11Updated 2 weeks ago