zhutao1009 / dndsView external linksLinks
Calculate the dn/ds (also pn and ps) value of cds
☆13Jul 11, 2020Updated 5 years ago
Alternatives and similar repositories for dnds
Users that are interested in dnds are comparing it to the libraries listed below
Sorting:
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- Renames headers in FASTA file☆12Jun 28, 2017Updated 8 years ago
- ☆16Jan 14, 2026Updated last month
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated last month
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Jan 12, 2024Updated 2 years ago
- ☆20Updated this week
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated last year
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- ☆12Mar 3, 2023Updated 2 years ago
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- A Swiss-Army-Knife for Bioinformaticians☆14Jan 27, 2026Updated 2 weeks ago
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆15Jan 16, 2026Updated last month
- ☆13Apr 7, 2023Updated 2 years ago
- Figures for the CHM13 T2T SD paper.☆10Sep 12, 2021Updated 4 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Sep 19, 2024Updated last year
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- ☆15Jul 21, 2022Updated 3 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated last year
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 2 years ago
- ☆15Aug 6, 2025Updated 6 months ago
- Quartet-based species tree and tree of blob estimation☆14Updated this week
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 4 months ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated 9 months ago
- Some useful bioinformatics pipelines for genomics analysis☆14May 25, 2021Updated 4 years ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago