a Sequencing Quality Assessment Tool
☆16Jul 28, 2022Updated 4 years ago
Alternatives and similar repositories for SQUAT
Users that are interested in SQUAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 7 months ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 11 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- Hagfish - assess an assembly through creative use of coverage plots☆37Aug 9, 2012Updated 14 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆26Apr 13, 2020Updated 6 years ago
- A read extraction and realignment tool for next generation sequencing data☆107Oct 29, 2022Updated 4 years ago
- ☆12Sep 7, 2019Updated 7 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 10 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- BioNanoAnalyst is a tool providing GUI to assess the genome assembly quality using BioNano data.☆12Oct 30, 2020Updated 6 years ago
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).☆21Sep 9, 2021Updated 5 years ago
- ☆11Oct 23, 2024Updated 2 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 7 years ago
- Reference genome quality scores☆20Dec 17, 2020Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆38Oct 6, 2016Updated 10 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 8 years ago
- Pan-genome analysis of Chinese (PGC)☆10Jan 9, 2024Updated 2 years ago
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- BUSCOMP: BUSCO Compiler and Comparison tool☆22Sep 19, 2024Updated 2 years ago
- Construct a Physical Map from Linked Reads☆20Apr 1, 2026Updated 7 months ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated 9 months ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Aug 10, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Automated pipeline for enrichment analysis in non-model organisms !☆17Feb 8, 2026Updated 8 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆69Aug 16, 2023Updated 3 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆23May 29, 2018Updated 8 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 9 months ago
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 5 years ago