☆12Feb 16, 2025Updated last year
Alternatives and similar repositories for vcfpop
Users that are interested in vcfpop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- SNP genotyping in polyploids☆16Aug 12, 2020Updated 5 years ago
- Genetic maps in autopolyploids☆31Jan 12, 2026Updated 2 months ago
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 8 years ago
- ☆28Jul 18, 2024Updated last year
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆26Feb 9, 2026Updated last month
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated last year
- ☆16Oct 9, 2024Updated last year
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆29Feb 23, 2026Updated last month
- ☆33Feb 24, 2026Updated last month
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆54Dec 15, 2025Updated 3 months ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆45Nov 1, 2025Updated 4 months ago
- extract MSAs from genome variation graphs☆34Updated this week
- An educational castle defence game made for The Odin Project's Game Jam.☆11Jun 30, 2022Updated 3 years ago
- PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of…☆14Apr 13, 2021Updated 4 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 4 years ago
- Genome-Phenome Wide Association Study☆15Feb 7, 2023Updated 3 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 2 months ago
- ☆12Nov 23, 2020Updated 5 years ago
- A pipeline to identify gene family using mutiple tools and scripts.☆11Aug 22, 2021Updated 4 years ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jul 19, 2023Updated 2 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 4 years ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 6 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago