conJUSTover / pSONICLinks
The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).
☆21Updated 4 years ago
Alternatives and similar repositories for pSONIC
Users that are interested in pSONIC are comparing it to the libraries listed below
Sorting:
- Likelihood-based Selective Sweep Detection☆40Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 9 months ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Multi-genome synteny block visualization tool☆47Updated 8 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆20Updated 4 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated 8 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- ☆45Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated last year
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆31Updated last month
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 7 months ago
- Automatic evaluation of HGTs☆30Updated 8 months ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- ☆32Updated 6 months ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆21Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- Infer demographic history with the Moran model☆48Updated 3 months ago
- R package to draw syntenic plots in 3 different styles☆42Updated last month
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago