conJUSTover / pSONICLinks
The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).
☆21Updated 3 years ago
Alternatives and similar repositories for pSONIC
Users that are interested in pSONIC are comparing it to the libraries listed below
Sorting:
- ☆41Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 5 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆28Updated last year
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 7 months ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Multi-genome synteny block visualization tool☆43Updated 6 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 6 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆25Updated last month
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated last week
- ☆40Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 10 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 5 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 10 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- ☆22Updated 3 years ago
- ☆32Updated 4 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆29Updated 2 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- Centromics: visualing centromeres with multiple omics data☆19Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated 2 weeks ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Genome Annotation Pipeline☆36Updated 11 months ago