kakitone / MetaFinisherSC
This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap-filling.
☆13Updated 8 years ago
Alternatives and similar repositories for MetaFinisherSC:
Users that are interested in MetaFinisherSC are comparing it to the libraries listed below
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- ☆15Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 5 months ago
- genomic alignment similarity search tool☆19Updated 7 months ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- Haploidy and Size Completeness Estimation☆13Updated 9 months ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- A nextflow pipeline for polishing CLR assemblies☆16Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 2 months ago
- ☆21Updated 4 months ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- Read nanopore sequence reads in real-time☆14Updated 7 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 9 months ago
- ☆14Updated this week
- Formats Roary output for viewing in FriPan☆10Updated 6 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆25Updated 3 months ago