Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
☆17Apr 29, 2026Updated 6 months ago
Alternatives and similar repositories for motifStack
Users that are interested in motifStack are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Toolkit for Sequence Motif Analysis☆33Oct 26, 2026Updated last week
- A short tutorial to using DL and keras for genomics with sequence data.☆16Dec 3, 2020Updated 5 years ago
- ☆13Jul 26, 2022Updated 4 years ago
- computational tool to identify trasposable element insertions using Hi-C data☆10Sep 17, 2020Updated 6 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- The software for modeling the 3D structure of a genome using Hi-C chromosome conformation capturing data☆11Feb 9, 2018Updated 8 years ago
- the analysis script for PrismNet☆10May 17, 2020Updated 6 years ago
- ☆10Mar 11, 2025Updated last year
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated 2 years ago
- ☆11Dec 16, 2025Updated 10 months ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆11Feb 16, 2022Updated 4 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts and notebooks used in Akgol Oksuz et al. paper☆12Jan 18, 2021Updated 5 years ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆14Nov 4, 2022Updated 3 years ago
- Kraken extension to identify viral contigs☆10Dec 4, 2020Updated 5 years ago
- Publication-quality sequence logos in R☆231Feb 14, 2026Updated 8 months ago
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆30Dec 19, 2023Updated 2 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Paired Genomic Loci Tool Suite☆35Nov 23, 2022Updated 3 years ago
- Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis☆22Jun 2, 2020Updated 6 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆38Apr 1, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 6 years ago
- ☆14Jan 18, 2024Updated 2 years ago
- Graphical Representation of Ancestral Sequence Predictions☆15Mar 6, 2023Updated 3 years ago
- BLAST-Like Alignment Tool☆23Jan 11, 2019Updated 7 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 11 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆31Apr 1, 2025Updated last year
- ☆42Sep 29, 2022Updated 4 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆17Nov 7, 2025Updated 11 months ago
- add DNA sequence motifs to ggplot☆14Jun 20, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Sep 4, 2025Updated last year
- genomics toolbox that supports both graphical and command-line execution☆15Oct 19, 2026Updated last week
- GC Skew Test for Bacterial Genomes☆32Sep 29, 2022Updated 4 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- ☆37Sep 25, 2022Updated 4 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Package for analysis and characterization of differential TADs☆27Aug 21, 2026Updated 2 months ago