jianhong / motifStack
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
☆15Updated 3 weeks ago
Alternatives and similar repositories for motifStack:
Users that are interested in motifStack are comparing it to the libraries listed below
- A continually expanding collection of RNA-seq tools☆47Updated 3 months ago
- ☆12Updated 3 weeks ago
- documentation for trackViewer☆29Updated 5 years ago
- Single-cell Hi-C data analysis toolbox☆24Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆16Updated 3 years ago
- General Use Scripts and Helper functions☆16Updated 6 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- ☆34Updated 2 years ago
- direct comparison of circular and linear RNA expression☆20Updated 4 years ago
- Motif manipulation functions for R.☆26Updated 2 months ago
- Example scripts for analyzing CUT&RUN datasets☆13Updated 6 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆34Updated 2 months ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Updated 10 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆27Updated 3 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆24Updated last month
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- ☆26Updated 3 months ago
- Circular RNA Identification for Nanopore Sequencing☆18Updated 8 months ago
- ☆19Updated 5 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆17Updated last year
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆25Updated 2 years ago
- A tool to assess the quality and distribution of genomic data☆16Updated 3 years ago