karubiotools / getSequenceInfo
Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
☆14Updated last month
Alternatives and similar repositories for getSequenceInfo
Users that are interested in getSequenceInfo are comparing it to the libraries listed below
Sorting:
- transposable element typing pipeline☆18Updated last year
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- ☆27Updated 3 years ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- ☆14Updated 3 years ago
- Find Unique genomic Regions☆29Updated last month
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Updated 6 months ago
- Genome size estimation from long read overlaps☆55Updated last month
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Genome-Genome circle synteny☆25Updated last year
- Convert genbank files to a swath of other formats☆18Updated last year
- ☆16Updated last month
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ☆20Updated 3 years ago
- A Nextflow pipeline for running synteny analysis.☆14Updated 2 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated last week
- ☆20Updated last year
- Quality control plotting for long reads☆10Updated last year
- Formats Roary output for viewing in FriPan☆11Updated 6 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- convert a blast output to a bed file☆12Updated 9 years ago
- finding conserved regions in highly diverse genomes☆15Updated 9 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 8 months ago
- Surveillance of pathogens using population genomics and sequencing☆23Updated this week