karubiotools / getSequenceInfoLinks
Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
☆14Updated 10 months ago
Alternatives and similar repositories for getSequenceInfo
Users that are interested in getSequenceInfo are comparing it to the libraries listed below
Sorting:
- ☆29Updated 4 years ago
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- ☆14Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- Find Unique genomic Regions☆32Updated 2 weeks ago
- snapper☆13Updated last year
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 10 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Updated last year
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆26Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last month
- Better Alignments with Translated HMMER☆24Updated this week
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 6 months ago
- Fast and scalable nanopore adaptive sampling☆35Updated 2 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 10 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 3 years ago
- Convert genbank files to a swath of other formats☆28Updated last month
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- Linear-time de novo Long Read Assembler☆41Updated 3 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 5 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated 2 weeks ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆34Updated 6 months ago