karubiotools / getSequenceInfoLinks
Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
☆14Updated 3 months ago
Alternatives and similar repositories for getSequenceInfo
Users that are interested in getSequenceInfo are comparing it to the libraries listed below
Sorting:
- Microbial agile accurate SNP Typer☆30Updated last year
- transposable element typing pipeline☆18Updated last year
- ☆28Updated 3 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 3 months ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 3 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- ☆14Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Find Unique genomic Regions☆30Updated 3 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 3 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆28Updated 4 months ago
- ☆20Updated 3 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated last week
- Colinear block visualisation tool☆31Updated last year
- ☆20Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 5 years ago
- strain-level analysis tools☆38Updated 8 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆28Updated 3 months ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆61Updated 10 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆21Updated 2 years ago
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago