churchill-lab / g2gtoolsLinks
Personal diploid genome creation and coordinate conversion
☆30Updated 4 months ago
Alternatives and similar repositories for g2gtools
Users that are interested in g2gtools are comparing it to the libraries listed below
Sorting:
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Updated 11 months ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Gene-based test of allele-specific expression without requiring haplotype information☆16Updated 7 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- ☆23Updated 8 months ago
- Adapters for trimming☆30Updated 6 years ago
- Long read to rMATS☆32Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 5 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago