churchill-lab / g2gtools
Personal diploid genome creation and coordinate conversion
☆24Updated last month
Alternatives and similar repositories for g2gtools:
Users that are interested in g2gtools are comparing it to the libraries listed below
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- ☆23Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 5 months ago
- ☆21Updated 9 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 weeks ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Genomic Association Tester☆30Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- Gene-based test of allele-specific expression without requiring haplotype information☆14Updated 6 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated this week
- Adapters for trimming☆30Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 3 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- A tool for evaluating RNA seq mapping☆22Updated 5 years ago
- A program for summarising CpG methylation patterns☆19Updated 8 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores☆8Updated 9 years ago