mirnylab / hiclib-legacyLinks
A legacy repository. Was replaced by distiller, cooler, and cooltools.
☆21Updated 5 years ago
Alternatives and similar repositories for hiclib-legacy
Users that are interested in hiclib-legacy are comparing it to the libraries listed below
Sorting:
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Updated 3 years ago
- ☆12Updated 6 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 3 months ago
- ☆37Updated 6 years ago
- ☆22Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆22Updated last year
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Updated 2 years ago
- ☆22Updated 5 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆39Updated last year
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 4 months ago
- ☆38Updated 2 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- ☆27Updated 3 years ago
- ☆10Updated 5 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Updated 5 months ago
- The analysis pipeline for FLEP-seq☆15Updated 2 years ago
- single-nucleus nanopore reads processing pipeline☆16Updated 2 years ago
- A toolkit for analyzing architectural stripes☆20Updated last year
- 4C-seq processing pipeline☆26Updated 8 months ago
- isoCirc☆10Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago