kundajelab / bpnet-manuscriptLinks
BPNet manuscript code.
☆12Updated 5 years ago
Alternatives and similar repositories for bpnet-manuscript
Users that are interested in bpnet-manuscript are comparing it to the libraries listed below
Sorting:
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Updated 2 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- A collection of perl scripts for NGS analysis☆17Updated last year
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- Paired-seq☆14Updated last year
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- ☆18Updated 3 years ago
- TRUST4 manuscript evaluation☆16Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- ☆12Updated 5 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆28Updated last year
- epigenome analysis to rank transcription factors☆15Updated 6 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 11 months ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated 2 years ago
- ☆12Updated 5 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated last year
- Perturb-seq analysis package☆16Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆25Updated 3 years ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Updated 2 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- functions and algorithms for single cell RNA-seq analyses☆12Updated 4 years ago
- Improved Ribo-seq enables identification of cryptic translation events☆16Updated 7 years ago
- ☆22Updated 4 months ago
- Comprehensive and scalable differential splicing analyses☆17Updated last month
- ☆10Updated 10 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 11 months ago