Alternatives and similar repositories for bpnet-manuscript

Users that are interested in bpnet-manuscript are comparing it to the libraries listed below

• califano-lab / OncoSig
  Code to run OncoSig Analyses
  ☆18Updated 5 years ago
• hemberg-lab / VASAseq_2022
  This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
  ☆23Updated 3 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• cxzhu / Paired-seq
  Paired-seq
  ☆14Updated last year
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• alberlab / igm
  Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures
  ☆12Updated 2 years ago
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆26Updated 3 years ago
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆24Updated 3 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 5 years ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆26Updated last year
• ma-compbio / CTCF-MP
  ☆12Updated 4 years ago
• CellProfiling / SingleCellProteogenomics
  Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model
  ☆13Updated last year
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 6 years ago
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆16Updated last year
• rpmccordlab / SMILE
  SMILE: Mutual Information Learning for Integration of Single Cell Omics Data
  ☆11Updated 2 years ago
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated 8 months ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• liulab-dfci / TRUST4_manuscript_evaluation
  TRUST4 manuscript evaluation
  ☆15Updated 3 years ago
• gagneurlab / FRASER-analysis
  Accompanying analysis code for the FRASER manuscript
  ☆26Updated 5 years ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• marcottelab / protein_complex_maps
  Kdrew's scripts for handling protein complex map data
  ☆14Updated 3 months ago
• goodarzilab / SwitchFinder
  ☆18Updated last year
• vanallenlab / MutPanningV2
  This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…
  ☆12Updated 5 years ago
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆29Updated 6 years ago
• weng-lab / BENGI
  ☆18Updated 3 years ago
• zhongzhd / ont_m6a_detection
  ☆10Updated 7 months ago
• kmayerb / tcrdist2
  Quantifiable predictive features define epitope-specific T cell receptor repertoires
  ☆13Updated 2 years ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 3 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago