Alternatives and similar repositories for bpnet-manuscript

Users that are interested in bpnet-manuscript are comparing it to the libraries listed below

• hemberg-lab / VASAseq_2022
  This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
  ☆23Updated 3 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• alberlab / igm
  Integrated Genome Modeling
  ☆12Updated 2 years ago
• califano-lab / OncoSig
  Code to run OncoSig Analyses
  ☆18Updated 4 years ago
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆16Updated 10 months ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆25Updated 11 months ago
• cxzhu / Paired-seq
  Paired-seq
  ☆14Updated last year
• weng-lab / BENGI
  ☆18Updated 2 years ago
• chensong611 / SNARE_prep
  dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline
  ☆9Updated 5 years ago
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated 6 months ago
• Acribbs / TallyNN
  single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)
  ☆13Updated 2 years ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 5 years ago
• ma-compbio / CTCF-MP
  ☆12Updated 4 years ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated 4 months ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 5 years ago
• dieterich-lab / CircTest
  CircRNA testing and ploting R package
  ☆10Updated 4 years ago
• rpmccordlab / SMILE
  SMILE: Mutual Information Learning for Integration of Single Cell Omics Data
  ☆11Updated 2 years ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆33Updated 3 years ago
• epigen / scifiRNA-seq
  ☆12Updated 4 years ago
• TheJacksonLaboratory / tcga_subtype_classification
  Detecting cancer subtypes with machine learning.
  ☆10Updated 5 years ago
• CellProfiling / SingleCellProteogenomics
  Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model
  ☆13Updated last year
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• Carldeboer / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆10Updated 5 years ago
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆26Updated 3 years ago
• YeoLab / gscripts
  General Use Scripts and Helper functions
  ☆16Updated 7 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 5 years ago
• zhongzhd / ont_m6a_detection
  ☆10Updated 4 months ago