Alternatives and similar repositories for bpnet-manuscript:

Users that are interested in bpnet-manuscript are comparing it to the libraries listed below

• chensong611 / SNARE_prep
  dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline
  ☆9Updated 5 years ago
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆16Updated 7 months ago
• deeptools / docker-galaxy-hicexplorer
  Galaxy Docker Image for the HiCExplorer
  ☆10Updated 6 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆16Updated 9 months ago
• cxzhu / Paired-seq
  Paired-seq
  ☆14Updated 9 months ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 5 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• dekkerlab / matrix_paper
  Scripts and notebooks used in Akgol Oksuz et al. paper
  ☆11Updated 4 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• yiplabcuhk / JEME
  JEME method for predicting enhancer targets
  ☆11Updated 7 years ago
• Acribbs / TallyNN
  single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)
  ☆13Updated last year
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• liulab-dfci / TRUST4_manuscript_evaluation
  TRUST4 manuscript evaluation
  ☆14Updated 2 years ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated last year
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• yuelab / BUTLRTools
  ☆15Updated 8 years ago
• TheJacksonLaboratory / tcga_subtype_classification
  Detecting cancer subtypes with machine learning.
  ☆10Updated 5 years ago
• dieterich-lab / CircTest
  CircRNA testing and ploting R package
  ☆9Updated 4 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• flemingtonlab / SpliceTools
  ☆17Updated 9 months ago
• jaymahat / scGROseq
  scGRO-seq analyses codes
  ☆12Updated last year
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 4 years ago
• califano-lab / OncoSig
  Code to run OncoSig Analyses
  ☆18Updated 4 years ago
• ma-compbio / CTCF-MP
  ☆11Updated 4 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆18Updated last month
• marrlab / CAR_T_TargetIdentification
  Computational identification of targets for CAR-T cell therapy in AML
  ☆16Updated 2 years ago
• wangjuan001 / hicplus
  ☆11Updated 3 years ago
• McGranahanLab / mhc-hammer
  Pipeline to detect HLA disruption from WES and RNAseq data
  ☆17Updated 2 months ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆14Updated 2 years ago