kundajelab / bpnet-manuscriptLinks
BPNet manuscript code.
☆12Updated 4 years ago
Alternatives and similar repositories for bpnet-manuscript
Users that are interested in bpnet-manuscript are comparing it to the libraries listed below
Sorting:
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆23Updated 3 years ago
- dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline☆9Updated 5 years ago
- Paired-seq☆14Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- A collection of perl scripts for NGS analysis☆16Updated 9 months ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 6 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- ☆18Updated last year
- Galaxy Docker Image for the HiCExplorer☆10Updated 6 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- ☆12Updated 4 years ago
- ☆19Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Comprehensive and scalable differential splicing analyses☆17Updated 4 months ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 2 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆13Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Updated 2 years ago
- Code to run OncoSig Analyses☆18Updated 4 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆32Updated 3 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆19Updated 5 months ago