djhshih / blatLinks
BLAST-Like Alignment Tool
☆22Updated 7 years ago
Alternatives and similar repositories for blat
Users that are interested in blat are comparing it to the libraries listed below
Sorting:
- Automatically design multiplex PCR primer pairs for diverse templates☆31Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Updated 2 years ago
- new repo☆28Updated 4 years ago
- ☆38Updated last year
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- iTAK☆48Updated last year
- ☆29Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- R package to explore active transposable elements with RNA-seq data☆21Updated 3 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Updated 7 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 5 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 5 years ago
- ☆47Updated last month
- ☆30Updated 4 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- ☆38Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Updated last year
- ☆12Updated 3 weeks ago
- ☆20Updated 3 years ago