CSOgroup / CALDER
☆19Updated last year
Related projects ⓘ
Alternatives and complementary repositories for CALDER
- ☆20Updated 4 years ago
- ☆35Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆20Updated last year
- ☆24Updated 2 years ago
- ☆16Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 7 months ago
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆18Updated 10 months ago
- ☆10Updated 5 years ago
- ☆16Updated 3 months ago
- scripts for analyzing the CVDC data.☆17Updated 4 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated last month
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- 4C-seq processing pipeline☆22Updated 7 months ago
- R package to evaluate the reproducibility of Hi-C data☆25Updated last year
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- ☆17Updated 7 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- ☆23Updated 3 years ago
- ☆10Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- Statistically Significant loops from HiChIP data☆39Updated 7 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago
- ☆21Updated 5 months ago
- ☆15Updated 2 years ago
- A program for the analysis of single cell nanopore long read data☆13Updated 4 months ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆21Updated 2 weeks ago
- ☆13Updated last year