CSOgroup / CALDERLinks
☆22Updated last year
Alternatives and similar repositories for CALDER
Users that are interested in CALDER are comparing it to the libraries listed below
Sorting:
- ☆21Updated 4 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- ☆37Updated 5 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- ☆26Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆23Updated 2 months ago
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- ☆11Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆11Updated 2 years ago
- ☆22Updated 6 months ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 8 months ago
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Micro DNA identification☆23Updated 3 years ago
- ☆19Updated 10 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- ☆28Updated 6 months ago
- ☆19Updated 2 years ago
- ☆10Updated 4 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 11 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆11Updated last month