huangwenze / PrismNet_analysisLinks
the analysis script for PrismNet
☆10Updated 5 years ago
Alternatives and similar repositories for PrismNet_analysis
Users that are interested in PrismNet_analysis are comparing it to the libraries listed below
Sorting:
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆65Updated last year
- HLA-II ligand predictor.☆45Updated 2 years ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆23Updated last year
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆19Updated 5 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆54Updated 6 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆87Updated 3 years ago
- Scripts for building computational models of gene regulation with tensorflow☆11Updated 5 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆52Updated 6 years ago
- ☆18Updated last year
- Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences☆31Updated 4 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- ☆24Updated 3 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Updated 9 months ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Updated 5 months ago
- Computational Optimization of DNA Activity (CODA)☆65Updated 8 months ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Updated 2 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 5 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- surrogate quantitative interpretability for deepnets☆24Updated 4 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- ☆59Updated 8 years ago