huangwenze / PrismNet_analysis
the analysis script for PrismNet
☆10Updated 4 years ago
Alternatives and similar repositories for PrismNet_analysis:
Users that are interested in PrismNet_analysis are comparing it to the libraries listed below
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆64Updated last year
- HLA-II ligand predictor.☆43Updated 2 years ago
- ☆11Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- A visualization software for antibody multi sequence alignment☆18Updated 10 months ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- Modelling RBP binding preferences to predict RPB binding sites☆11Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆45Updated 5 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆80Updated 2 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆18Updated 3 weeks ago
- ☆9Updated last year
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆17Updated 9 months ago
- ☆18Updated last year
- ☆18Updated 2 months ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆15Updated last year
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 3 years ago
- ☆20Updated 2 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 4 years ago
- Scripts for building computational models of gene regulation with tensorflow☆10Updated 5 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆68Updated 2 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆13Updated 4 years ago
- ☆36Updated 3 months ago
- Integrative Python library for RNA Secondary Structure Analysis☆16Updated 3 weeks ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆74Updated last year
- Computational Optimization of DNA Activity (CODA)☆56Updated 2 weeks ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆29Updated last year
- Code and Data for Generative modeling for AAV design☆10Updated last year
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago