qunhualilab / hicrepLinks
R package to evaluate reproducibility of Hi-C data
☆10Updated 2 years ago
Alternatives and similar repositories for hicrep
Users that are interested in hicrep are comparing it to the libraries listed below
Sorting:
- Spectral and reproducibility analysis of Hi-C contact maps☆12Updated 4 years ago
- ☆21Updated 4 years ago
- QC report generator for Hi-C pairs file☆12Updated 4 years ago
- A toolkit for analyzing architectural stripes☆19Updated 6 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- ☆13Updated last year
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- Chromatin domains bursting with flavor☆12Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 8 months ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- ☆22Updated last year
- chia pet analysis software☆25Updated 6 years ago
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last year
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 4 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Chromatin States Map in mouse embryonic stem cell☆15Updated 7 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- ChIA-PET Utilities☆12Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- An Optimized Nested TAD caller for Hi-C data☆22Updated 3 years ago
- Arima Capture HiC pipeline (Arima-CHiC)☆11Updated last year
- CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.☆9Updated 3 years ago
- ☆12Updated 5 years ago
- ☆19Updated last year
- ☆17Updated last year
- Tools for DLO HiC data analyze☆16Updated 2 years ago