qunhualilab / hicrepLinks
R package to evaluate reproducibility of Hi-C data
☆10Updated 2 years ago
Alternatives and similar repositories for hicrep
Users that are interested in hicrep are comparing it to the libraries listed below
Sorting:
- ☆22Updated 5 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Updated 4 years ago
- A toolkit for analyzing architectural stripes☆20Updated 11 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆22Updated last year
- QC report generator for Hi-C pairs file☆12Updated 5 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated 2 years ago
- ☆13Updated 2 months ago
- ☆22Updated 2 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- chia pet analysis software☆25Updated 6 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 4 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆39Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 3 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Updated 3 years ago
- ☆38Updated 2 years ago
- Red-C data processing☆15Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- ☆37Updated 6 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Updated 4 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago