biocom-uib / vpf-toolsLinks
Virus Protein Family tools
☆30Updated 3 years ago
Alternatives and similar repositories for vpf-tools
Users that are interested in vpf-tools are comparing it to the libraries listed below
Sorting:
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- Prophage Activity Estimator☆29Updated last year
- ☆33Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆53Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- Binning Virus Genomes from Metagenomes☆68Updated 3 years ago
- ☆62Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 8 months ago
- ☆24Updated 7 years ago
- ☆33Updated 3 months ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆18Updated 2 years ago
- ☆56Updated 6 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 7 months ago
- Unified Human Gut Virome Catalog☆40Updated 2 months ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated this week
- ☆20Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated last week
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 6 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- An algorithm for clustering metagenomic sequences.☆41Updated 3 weeks ago