biocom-uib / vpf-tools
Virus Protein Family tools
☆29Updated 2 years ago
Alternatives and similar repositories for vpf-tools:
Users that are interested in vpf-tools are comparing it to the libraries listed below
- Prophage Activity Estimator☆26Updated 9 months ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- viralComplete: BLAST-based viral completeness verification☆24Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- ☆29Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Unified Human Gut Virome Catalog☆27Updated 8 months ago
- ☆24Updated 6 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 3 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆19Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆26Updated 2 weeks ago
- ☆31Updated last year
- IslandPath standalone software☆31Updated last year
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆24Updated 5 months ago
- A python library for predicting phage lifestyle based on genome sequence☆36Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated 2 weeks ago
- Gene Absence Presence Identification tool.☆26Updated last year
- Discover and annotate the virome☆39Updated 5 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 6 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 5 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated last month
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆25Updated 2 weeks ago
- Bacterial GWAS analysis☆37Updated 2 weeks ago
- viralFlye pipeline☆18Updated 7 months ago
- Gene-flank analysis tool☆27Updated 3 months ago