biocom-uib / vpf-toolsLinks
Virus Protein Family tools
☆30Updated 3 years ago
Alternatives and similar repositories for vpf-tools
Users that are interested in vpf-tools are comparing it to the libraries listed below
Sorting:
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- ☆34Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Prophage Activity Estimator☆26Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆73Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- ☆32Updated 6 months ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- ☆56Updated last year
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆16Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated 2 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 4 months ago
- whole genome MLST analysis☆46Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- IslandPath standalone software☆33Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- Bacterial GWAS analysis☆43Updated last month
- ☆53Updated 2 months ago
- Discover and annotate the virome☆49Updated this week
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated last month
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 10 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Prediction of prophages from bacterial genomes☆79Updated 2 months ago
- ☆59Updated last year