biocom-uib / vpf-toolsLinks
Virus Protein Family tools
☆30Updated 3 years ago
Alternatives and similar repositories for vpf-tools
Users that are interested in vpf-tools are comparing it to the libraries listed below
Sorting:
- EzAAI - High Throughput Prokaryotic AAI Calculator☆43Updated last week
- Prophage Activity Estimator☆26Updated last year
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- ☆34Updated last year
- ☆56Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆73Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- ☆32Updated 5 months ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 3 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated 2 months ago
- ☆55Updated last year
- ☆20Updated 11 months ago
- IslandPath standalone software☆33Updated last year
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆16Updated last year
- A toolkit for prokaryotic comparative genomics☆50Updated 6 months ago
- ☆25Updated 6 years ago
- More scalable dereplication for metagenome assembled genomes☆63Updated last week
- Prediction of prophages from bacterial genomes☆79Updated last month
- viralComplete: BLAST-based viral completeness verification☆25Updated 3 years ago
- ☆52Updated last month
- ☆35Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- An algorithm for clustering metagenomic sequences.☆37Updated 4 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- KEGG Module Evaluation Tool☆30Updated last year
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 10 months ago