feargalr / DemovirLinks
Taxonomic classification of viruses at Order and Family level
☆20Updated 2 years ago
Alternatives and similar repositories for Demovir
Users that are interested in Demovir are comparing it to the libraries listed below
Sorting:
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 weeks ago
- Prophage Activity Estimator☆26Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- ☆56Updated last year
- ☆34Updated last year
- ☆53Updated last month
- ☆18Updated 3 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 4 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- ☆20Updated 11 months ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆16Updated last year
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 5 years ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- Virus Protein Family tools☆30Updated 3 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆74Updated 2 months ago
- ☆25Updated 6 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- whole genome MLST analysis☆46Updated 2 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- An algorithm for clustering metagenomic sequences.☆37Updated 4 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ☆57Updated last year
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆42Updated 4 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 4 months ago