weng-lab / umitools
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
☆15Updated 6 years ago
Alternatives and similar repositories for umitools:
Users that are interested in umitools are comparing it to the libraries listed below
- ☆12Updated 4 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆16Updated 5 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆18Updated 2 years ago
- ☆23Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 2 weeks ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆11Updated 6 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- ☆21Updated 9 months ago
- ☆11Updated last year
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆12Updated 7 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆18Updated last year
- scover☆23Updated last year
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆17Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 weeks ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- ☆14Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago