weng-lab / umitoolsLinks
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
☆16Updated 7 years ago
Alternatives and similar repositories for umitools
Users that are interested in umitools are comparing it to the libraries listed below
Sorting:
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated this week
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆30Updated 4 years ago
- ☆18Updated 4 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 3 months ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- cfDNA analysis workflow☆22Updated 2 years ago
- ☆17Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 2 months ago
- ☆23Updated 4 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- ☆14Updated 6 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- ☆13Updated 3 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 8 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆18Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- ☆11Updated 7 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago