A toolset for handling sequencing data with unique molecular identifiers (UMIs)
☆17Jul 13, 2018Updated 7 years ago
Alternatives and similar repositories for umitools
Users that are interested in umitools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆27Apr 6, 2019Updated 7 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Dec 26, 2022Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Jun 26, 2017Updated 8 years ago
- ☆11Aug 3, 2018Updated 7 years ago
- One stop MIP design and analysis☆24Sep 30, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- Pipeline in place at the UGI for DNA level analysis☆11Aug 29, 2016Updated 9 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- The official documentation from Peter Langfelder and Steve Horvath. I am only reuploading it as it is not anymore available and I do not …☆23Jul 24, 2024Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- Merging paired-end reads and removing adapters☆46Nov 7, 2025Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Just the leafviz parts of Leafcutter☆15Apr 2, 2026Updated 2 months ago
- Scripts supporting identification of genomic features affecting survival time in cancer☆14Dec 6, 2018Updated 7 years ago
- A tool to find and visualize rearrangements in DNA sequences☆16Sep 16, 2019Updated 6 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Python interface to the GenoLogics LIMS server via its REST API.☆30Aug 13, 2025Updated 9 months ago
- Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies☆26Feb 28, 2023Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Mar 20, 2026Updated 2 months ago
- ☆19Apr 14, 2024Updated 2 years ago
- ML course materials for bioinformatics students following the Basic Machine Learning for Bioinformatics course at Utrecht University. Cou…☆17Feb 27, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Dec 7, 2020Updated 5 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- ☆34Jul 8, 2025Updated 11 months ago
- Gitools, is a framework for analysis and visualization of genomic data. Data and results are represented as browsable heatmaps. Gitools a…☆28Dec 5, 2022Updated 3 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- Supplementary Material to accompany the paper, DJ Warne, SA Sisson, C Drovandi (2019) Acceleration of expensive computations in Bayesian…☆13Oct 23, 2020Updated 5 years ago
- Plot stacked logos for single or multiple DNA, RNA and amino acid sequence☆17Apr 29, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Degenerate Codon Design☆13Feb 13, 2020Updated 6 years ago
- ☆43Oct 10, 2025Updated 8 months ago
- Protein-Protein Docking using Genetic Algorithm☆20Jun 3, 2026Updated last week
- A tool to call somatic single nucleotide variants.☆41Aug 21, 2015Updated 10 years ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- Hybrid UNet model for traffic prediction from traffic movies. The hybrid graph operation is a mixture of CNN and GNN operations to captur…☆14Dec 13, 2022Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆58Oct 8, 2021Updated 4 years ago