weng-lab / umitoolsLinks
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
☆15Updated 7 years ago
Alternatives and similar repositories for umitools
Users that are interested in umitools are comparing it to the libraries listed below
Sorting:
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- cfDNA analysis workflow☆21Updated 2 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- ☆11Updated 7 years ago
- ☆12Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- GENome Organisation Visual Analytics☆16Updated 3 years ago
- ☆17Updated last year
- Peak calling for 4C data☆12Updated 7 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆18Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated 11 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆17Updated last year
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 8 months ago
- ☆14Updated 3 months ago
- Integrated workflow for SV calling from single-cell Strand-seq data☆24Updated 6 months ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 5 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 6 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated 3 weeks ago
- Workflow for Sequenza, cellularity and ploidy