vaquerizaslab / tadtoolLinks
TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
☆45Updated 2 years ago
Alternatives and similar repositories for tadtool
Users that are interested in tadtool are comparing it to the libraries listed below
Sorting:
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- 4C-seq processing pipeline☆23Updated 2 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- Genomic Association Tester☆31Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 4 months ago
- Allele-specific alignment sorting☆56Updated 2 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- ☆37Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- IDR☆31Updated 2 years ago
- Tools for analyzing DNA methylation data☆41Updated 3 weeks ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Tutorial Website☆59Updated 4 years ago
- ☆23Updated 5 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- ☆30Updated 6 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago