Alternatives and similar repositories for GeneDoc

Users that are interested in GeneDoc are comparing it to the libraries listed below

• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆32Updated 6 years ago
• mmcco / RepeatScout
  The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…
  ☆16Updated 2 years ago
• fenghen360 / HomBlocks
  HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching
  ☆36Updated 8 years ago
• ZhijianZhou01 / BioAider
  A richly featured desktop platform for data analysis of bioinformatics. Especially, for quick sequence annotation and mutation analysis o…
  ☆34Updated last year
• davidemms / STRIDE
  STRIDE: Species Tree Root Inference from Gene Duplication Events
  ☆11Updated 7 years ago
• liusihang / ViOTUcluster
  ViOTUcluster: A high-speed, all-in-one solution that streamlines the entire virome analysis workflow
  ☆20Updated 2 weeks ago
• peterthorpe5 / public_scripts
  collection of bioinformatic scripts
  ☆32Updated last year
• glarue / reciprologs
  Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
  ☆13Updated last year
• xia-lab / Seq2Fun
  ☆17Updated 6 months ago
• aziele / pfam_scan
  A tool for scanning FASTA protein sequences against a library of Pfam HMMs
  ☆24Updated 3 years ago
• fenghen360 / BLAST2OGMSA
  Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis
  ☆11Updated 7 years ago
• sing-group / ALTER
  ALignment Transformation EnviRonment
  ☆11Updated 7 years ago
• ariloytynoja / prank-msa
  Automatically exported from code.google.com/p/prank-msa
  ☆31Updated 2 months ago
• carnegie / PlantClusterFinder
  ☆17Updated 2 months ago
• PlantDr430 / BuscoOrthoPhylo
  Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
  ☆20Updated 6 years ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 4 months ago
• DrMicrobit / mira
  MIRA sequence assembler
  ☆31Updated last year
• ijustwanthaveaname / Genefamily_pipeline
  A pipeline to identify gene family using mutiple tools and scripts.
  ☆11Updated 4 years ago
• mattheiter / openPrimeR
  An R Package for Multiplex PCR Primer Design and Analysis
  ☆29Updated 6 months ago
• csoderlund / SyMAP
  Synteny Mapping and Analysis Program
  ☆30Updated this week
• Gabaldonlab / EvolClust
  Evolcust retrieves groups of genes that appear clustered together in groups of species
  ☆16Updated 3 years ago
• Stephane-S / Simplot_PlusPlus
  ☆39Updated 2 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 4 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆33Updated 4 years ago
• torkian / blast-QC
  A Quality Control filter and parser for NCBI BLAST XML results.
  ☆17Updated 5 years ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆54Updated last year
• rikuu / Gap2Seq
  Gap2Seq is a gap filling and insertion genotyping tool.
  ☆22Updated last year
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• djhshih / blat
  BLAST-Like Alignment Tool
  ☆22Updated 7 years ago
• galaxyproject / KegAlign
  fork of the GPU genome aligner
  ☆34Updated last week