jianhong / ChIPpeakAnno
☆12Updated 2 months ago
Alternatives and similar repositories for ChIPpeakAnno:
Users that are interested in ChIPpeakAnno are comparing it to the libraries listed below
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Statistically Significant loops from HiChIP data☆40Updated 11 months ago
- Genomic Association Tester☆30Updated last year
- ☆16Updated 6 years ago
- 4C-seq processing pipeline☆23Updated 2 weeks ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- Tutorial Website☆57Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- ☆28Updated 3 months ago
- ☆38Updated 3 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 3 years ago
- An R interface to the MEME Suite☆50Updated 5 months ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆21Updated 2 months ago
- ☆23Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆23Updated last year
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆31Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Quantitation and visualization of differential alternative splicing events☆10Updated last year
- ☆36Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- ☆18Updated 8 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- ATAC-seq processing pipeline☆32Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago