deeptools / HiCMatrixLinks
☆13Updated last year
Alternatives and similar repositories for HiCMatrix
Users that are interested in HiCMatrix are comparing it to the libraries listed below
Sorting:
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- ☆21Updated 4 years ago
- ☆37Updated 5 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last year
- ☆22Updated last year
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 8 months ago
- Chromatin domains bursting with flavor☆12Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- Blazing fast toolkit to work with .hic and .cool files☆29Updated last week
- Processing and plotting tools for genomics data☆20Updated last week
- HiCtrans is a pipeline to call translocations from Hi-C data☆15Updated 3 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated 11 months ago
- R package to evaluate reproducibility of Hi-C data☆10Updated 2 years ago
- ☆12Updated 5 years ago
- A toolkit for analyzing architectural stripes☆19Updated 6 months ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- Genomic Association Tester☆31Updated 2 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- ☆14Updated 9 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year