deeptools / HiCMatrixLinks
☆13Updated 4 months ago
Alternatives and similar repositories for HiCMatrix
Users that are interested in HiCMatrix are comparing it to the libraries listed below
Sorting:
- ☆37Updated 6 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Updated 4 years ago
- Blazing fast toolkit to work with .hic and .cool files☆42Updated last week
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 4 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- ☆38Updated 2 years ago
- A Python implementation for BH-FDR and HiCCUPS☆53Updated 3 weeks ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- ☆22Updated 2 years ago
- ☆22Updated 5 years ago
- R package to evaluate reproducibility of Hi-C data☆10Updated 2 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 4 years ago
- Processing and plotting tools for genomics data☆21Updated this week
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Find and characterise transposable element insertions☆20Updated 2 years ago
- IDR☆30Updated 2 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- ☆14Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Updated 2 years ago
- Red-C data processing☆15Updated 2 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Updated last year