aertslab / scATAC-seq_benchmark
☆16Updated last year
Alternatives and similar repositories for scATAC-seq_benchmark:
Users that are interested in scATAC-seq_benchmark are comparing it to the libraries listed below
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 9 months ago
- ☆44Updated 5 months ago
- ☆29Updated last week
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 6 months ago
- ☆20Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 7 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆20Updated 9 months ago
- TF analysis from epigenetic and Hi-C data☆17Updated last month
- Paired Insertion Counting for snATAC-seq data☆17Updated 5 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆21Updated last year
- ☆9Updated last month
- Network construction Algorithm☆20Updated 4 months ago
- ☆13Updated last year
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 2 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 2 weeks ago
- Whole mouse brain snATAC seq analysis☆24Updated 3 months ago
- ☆22Updated 3 months ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- ☆34Updated 2 years ago
- ☆31Updated 9 months ago
- Functional Inference of Gene Regulation☆39Updated 6 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated 4 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated 2 weeks ago
- ☆17Updated 5 months ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated last year
- An analysis toolkit for single-cell methylation sequencing data☆12Updated 2 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- single-cell clustering based on alternative splicing landscapes☆16Updated 10 months ago