MengjunWu / TCseqLinks
An R package for time course sequencing data analysis
☆20Updated 2 years ago
Alternatives and similar repositories for TCseq
Users that are interested in TCseq are comparing it to the libraries listed below
Sorting:
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- Extract Sequence from Genome According to Annotation File☆37Updated 4 months ago
- An R package to visualize bigwigs.☆31Updated 3 years ago
- binned motif enrichment analysis and visualisation☆41Updated 3 weeks ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆10Updated 3 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆23Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Peak caller for CUT&TAG data☆29Updated 3 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 3 years ago
- ☆38Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Tutorial Website☆59Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Pipeline for Cut&Tag analysis☆24Updated 4 months ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Define regions in the genome☆32Updated 3 years ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- Motif manipulation functions for R.☆30Updated 4 months ago
- R package wrapping bedtools☆42Updated 5 months ago
- ☆25Updated last year
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- ☆18Updated 4 years ago
- ☆49Updated last year