MengjunWu / TCseqLinks
An R package for time course sequencing data analysis
☆20Updated 2 years ago
Alternatives and similar repositories for TCseq
Users that are interested in TCseq are comparing it to the libraries listed below
Sorting:
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 2 years ago
- Extract Sequence from Genome According to Annotation File☆38Updated 7 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆11Updated 6 months ago
- workshop website on readthedocs☆21Updated last month
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆23Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- R package wrapping bedtools☆44Updated 7 months ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- An R package to visualize bigwigs.☆32Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- ☆15Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 6 months ago
- ☆26Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆34Updated this week
- binned motif enrichment analysis and visualisation☆43Updated 2 weeks ago
- Peak caller for CUT&TAG data☆29Updated 3 years ago
- ☆23Updated 8 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- RNA editing tests☆17Updated 5 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated last week
- Tutorial Website☆60Updated 4 years ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago