MengjunWu / TCseqLinks
An R package for time course sequencing data analysis
☆21Updated 2 years ago
Alternatives and similar repositories for TCseq
Users that are interested in TCseq are comparing it to the libraries listed below
Sorting:
- Extract Sequence from Genome According to Annotation File☆39Updated 9 months ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Updated 6 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- Peak caller for CUT&TAG data☆30Updated 3 years ago
- binned motif enrichment analysis and visualisation☆45Updated last week
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- An R package to visualize bigwigs.☆32Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- ☆23Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Pipeline for Cut&Tag analysis☆24Updated 9 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Tutorial Website☆63Updated 5 years ago
- ☆15Updated 3 years ago
- Motif manipulation functions for R.☆30Updated 4 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- R package wrapping bedtools☆44Updated 10 months ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆17Updated 7 years ago
- workshop website on readthedocs☆21Updated 4 months ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆16Updated 4 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 8 months ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- ☆23Updated 11 months ago
- ☆42Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago