deeptools / docker-galaxy-hicexplorerLinks
Galaxy Docker Image for the HiCExplorer
☆10Updated 6 years ago
Alternatives and similar repositories for docker-galaxy-hicexplorer
Users that are interested in docker-galaxy-hicexplorer are comparing it to the libraries listed below
Sorting:
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Updated 4 years ago
- ☆16Updated 8 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- CircRNA testing and ploting R package☆10Updated 4 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- ☆16Updated 3 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 6 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Comprehensive Human Expressed SequenceS☆18Updated 3 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Transcriptome-wide network☆16Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆22Updated 2 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Advanced steps of the OSCA book☆13Updated last week
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- ☆19Updated 7 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- A collection of perl scripts for NGS analysis☆16Updated last year
- Single cell interactive plotting tools☆23Updated 5 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago