Detecting contamination in NGS data and multi-species analysis
☆83Nov 7, 2025Updated 5 months ago
Alternatives and similar repositories for FastQ-Screen
Users that are interested in FastQ-Screen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hi-C data processing pipeline☆38Feb 27, 2024Updated 2 years ago
- Plot stacked logos for single or multiple DNA, RNA and amino acid sequence☆18Nov 5, 2025Updated 5 months ago
- Read level DNA methylation analysis of bisulfite converted sequencing data☆19Feb 23, 2026Updated last month
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- R API and htmlwidget for Vitessce☆45Aug 13, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Apr 3, 2026Updated last week
- A quality control analysis tool for high throughput sequencing data☆591Mar 20, 2026Updated 3 weeks ago
- Toolkit for processing sequences in FASTA/Q formats☆1,534Jun 1, 2025Updated 10 months ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆25Mar 9, 2026Updated last month
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆96Oct 31, 2025Updated 5 months ago
- Clinical Whole Genome and Exome Sequencing Pipeline☆30Oct 27, 2025Updated 5 months ago
- An automated RNA-seq pipeline using Nextflow☆37Dec 17, 2025Updated 3 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Single-cell Consensus Clusters of Encoded Subspaces☆14Aug 14, 2023Updated 2 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆23Aug 28, 2025Updated 7 months ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 2 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Apr 4, 2025Updated last year
- VennDetail: a bioconductor package for VennDiagram visualization and details extraction☆30Mar 18, 2026Updated 3 weeks ago
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 2 months ago
- Network Visualization using both GUI and Programming☆29May 27, 2025Updated 10 months ago
- do multiple nucleotide sequence alignment fast and accurately☆18Dec 1, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆17Dec 18, 2024Updated last year
- The second version of the Kraken taxonomic sequence classification system☆889Apr 1, 2026Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,437Mar 28, 2026Updated 2 weeks ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- A dotplot application for DNA/RNA sequence☆11Nov 28, 2022Updated 3 years ago
- ☆10Dec 11, 2024Updated last year
- Scripts used for the ACT paper