StevenWingett / FastQ-ScreenLinks
Detecting contamination in NGS data and multi-species analysis
☆81Updated 2 months ago
Alternatives and similar repositories for FastQ-Screen
Users that are interested in FastQ-Screen are comparing it to the libraries listed below
Sorting:
- BAM Statistics, Feature Counting and Annotation☆152Updated last month
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆92Updated 3 weeks ago
- FEELnc : FlExible Extraction of LncRNA☆93Updated 5 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- A small-RNA sequencing analysis pipeline☆98Updated 2 weeks ago
- ☆122Updated 5 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆148Updated 4 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆110Updated 2 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆52Updated 2 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆105Updated 2 months ago
- ☆109Updated last month
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆88Updated this week
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆118Updated 6 months ago
- Somatic structural variant caller for long-read data☆87Updated 2 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆105Updated 7 months ago
- Tips for Nextflow and cheatsheet for channel operation☆79Updated last year
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆124Updated 5 months ago
- WisecondorX — An evolved WISECONDOR☆109Updated last month
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 4 months ago
- Tools for plotting methylation data in various ways☆166Updated last month