jenniferlu717 / SkewIT
GC Skew Test for Bacterial Genomes
☆27Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for SkewIT
- Find Unique genomic Regions☆29Updated this week
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆25Updated 3 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆29Updated 3 years ago
- ☆25Updated 3 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated last year
- Ancient microbiome snakemake workflow☆21Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Microbial agile accurate SNP Typer☆29Updated 10 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆19Updated 2 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- ☆27Updated last year
- Influenza genome analysis Nextflow workflow☆22Updated last week
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- Strain Resolution ON Graphs☆46Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆17Updated this week
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 2 weeks ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆31Updated 4 months ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Hitting associations with k-mers☆46Updated 2 years ago
- ☆40Updated this week
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago