jenniferlu717 / SkewITLinks
GC Skew Test for Bacterial Genomes
☆30Updated 2 years ago
Alternatives and similar repositories for SkewIT
Users that are interested in SkewIT are comparing it to the libraries listed below
Sorting:
- Find Unique genomic Regions☆30Updated this week
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆62Updated 11 months ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago
- ☆26Updated 4 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated 2 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆35Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆42Updated 2 months ago
- Convert genbank files to a swath of other formats☆18Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- ☆28Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆23Updated 2 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated 11 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- ☆26Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆41Updated last week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆21Updated 3 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago