shenlab-sinai / ngsplotdbLinks
Genome databases generation pipeline for ngs.plot and region_analysis.
☆16Updated 10 years ago
Alternatives and similar repositories for ngsplotdb
Users that are interested in ngsplotdb are comparing it to the libraries listed below
Sorting:
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- chia pet analysis software☆25Updated 6 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- ☆21Updated 5 years ago
- An Optimized Nested TAD caller for Hi-C data☆23Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 10 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- ☆13Updated 8 years ago
- IDR☆30Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ☆37Updated 6 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Updated 3 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆18Updated 2 months ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆34Updated 10 months ago
- ☆23Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- ☆17Updated 6 years ago
- Long read to rMATS☆32Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆38Updated 4 years ago
- Genomic Association Tester☆32Updated 2 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆22Updated 2 years ago