shenlab-sinai / ngsplotdbLinks
Genome databases generation pipeline for ngs.plot and region_analysis.
☆16Updated 9 years ago
Alternatives and similar repositories for ngsplotdb
Users that are interested in ngsplotdb are comparing it to the libraries listed below
Sorting:
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- ☆22Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 8 months ago
- ☆38Updated 4 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- ☆30Updated 7 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- chia pet analysis software☆25Updated 6 years ago
- ☆36Updated 5 years ago
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆15Updated 6 years ago
- RNA editing tests☆17Updated 4 years ago
- ☆21Updated 4 years ago
- Docker for 4DN Hi-C processing pipeline☆61Updated 8 months ago
- Enhanced version of the FastQTL QTL mapper☆67Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Micro DNA identification☆24Updated 4 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- An Optimized Nested TAD caller for Hi-C data☆22Updated 4 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- 4C-seq processing pipeline☆24Updated 4 months ago
- ☆17Updated 6 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- IDR☆31Updated 2 years ago