rschwess / tutorial_dl_for_genomicsLinks
A short tutorial to using DL and keras for genomics with sequence data.
☆15Updated 4 years ago
Alternatives and similar repositories for tutorial_dl_for_genomics
Users that are interested in tutorial_dl_for_genomics are comparing it to the libraries listed below
Sorting:
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- chia pet analysis software☆25Updated 6 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 3 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Chromatin States Map in mouse embryonic stem cell☆17Updated 7 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- An Optimized Nested TAD caller for Hi-C data☆24Updated 4 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆35Updated 11 months ago
- ☆20Updated 6 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 8 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆16Updated 10 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 2 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆17Updated 5 years ago
- ☆16Updated 8 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- ☆39Updated 3 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- IDR☆30Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- ☆39Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- binned motif enrichment analysis and visualisation☆41Updated last month
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago