rschwess / tutorial_dl_for_genomicsLinks
A short tutorial to using DL and keras for genomics with sequence data.
☆15Updated 5 years ago
Alternatives and similar repositories for tutorial_dl_for_genomics
Users that are interested in tutorial_dl_for_genomics are comparing it to the libraries listed below
Sorting:
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆36Updated last year
- ☆31Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- IDR☆30Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- ☆34Updated 2 months ago
- ☆38Updated 5 years ago
- chia pet analysis software☆25Updated 7 years ago
- HiC for copy Number variation and Translocation detection☆41Updated 4 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆30Updated 10 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Updated 3 years ago
- Chromatin States Map in mouse embryonic stem cell☆19Updated 7 years ago
- ☆39Updated 7 months ago
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 6 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Updated 3 years ago
- ☆20Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Docker for 4DN Hi-C processing pipeline☆61Updated last year
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago