Alternatives and similar repositories for tutorial_dl_for_genomics

Users that are interested in tutorial_dl_for_genomics are comparing it to the libraries listed below

• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆50Updated 6 years ago
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆39Updated 4 years ago
• kundajelab / idr
  IDR
  ☆30Updated 2 years ago
• joachimwolff / scHiCExplorer
  Single-cell Hi-C data analysis toolbox
  ☆27Updated 4 years ago
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆42Updated last year
• nskvir / RepEnrich
  RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆28Updated 3 years ago
• dphansti / mango
  chia pet analysis software
  ☆25Updated 6 years ago
• guifengwei / ChromHMM_mESC_mm10
  Chromatin States Map in mouse embryonic stem cell
  ☆17Updated 7 years ago
• dekkerlab / crane-nature-2015
  code associated with crane-nature-2015, 10.1038/nature14450
  ☆36Updated 10 years ago
• GoekeLab / proActiv
  Estimation of Promoter Activity from RNA-Seq data
  ☆56Updated 4 months ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆46Updated last year
• broadinstitute / RNA_MUTECT_1.0-1
  ☆39Updated 5 years ago
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆35Updated 11 months ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆27Updated 2 years ago
• gxiaolab / mountainClimber
  ☆20Updated 6 years ago
• Xinglab / rMATS-long
  ☆34Updated this week
• bernardo-de-almeida / motif-clustering
  Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
  ☆28Updated 2 years ago
• scoutzxb / CscoreTool
  ☆22Updated 5 years ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆31Updated 4 years ago
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆43Updated 11 months ago
• HuMingLab / SnapHiC
  SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data
  ☆41Updated 2 years ago
• battle-lab / twn_tsn
  Transcriptome-wide network
  ☆16Updated 6 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆41Updated 3 years ago
• r3fang / snATAC
  <<------ Use SnapATAC!!
  ☆26Updated 6 years ago
• KCCG / rageseq
  RAGE-seq scripts
  ☆18Updated 4 years ago
• kundajelab / ataqc
  ☆17Updated 6 years ago
• cfce / chilin
  ChIP-seq DC and QC Pipeline
  ☆36Updated 4 years ago
• gagneurlab / absplice
  ☆39Updated 4 months ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago