CshlSiepelLab / RPHAST
RPHAST: Phylogenetic Analysis with Space/Time Models in R
☆10Updated last month
Alternatives and similar repositories for RPHAST:
Users that are interested in RPHAST are comparing it to the libraries listed below
- read and analyse RepeatMasker output☆24Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- General purpose population genetics software☆12Updated 5 years ago
- ☆16Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- ☆42Updated 8 months ago
- Yet another Hi-C scaffolding tool☆18Updated 2 months ago
- A haplotype analysis toolkit for natural variation study.☆28Updated last year
- Computational Analysis of Gene Expression Evolution☆36Updated 2 months ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 7 months ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- ☆32Updated 4 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- ☆21Updated 5 years ago
- ☆19Updated 4 months ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆30Updated 4 years ago
- ☆11Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- ☆13Updated last year
- Chromosome-level synteny plotting using orthologous regions☆28Updated 4 months ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 10 months ago
- Transposable element polymorphism identification☆32Updated 4 years ago