Alternatives and similar repositories for ExTraMapper

Users that are interested in ExTraMapper are comparing it to the libraries listed below

• xia-lab / Seq2Fun
  ☆17Updated 6 months ago
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆18Updated last year
• popitsch / rnalib
  rnalib: a python-based transcriptomics library
  ☆11Updated this week
• RacconC / gtftools
  ☆16Updated 2 years ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆36Updated 6 years ago
• lucieabergeron / vertebrate_rate
  Method used in the study on germline mutation rate estimation in 68 species of vertebrates.
  ☆16Updated 4 years ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆18Updated last year
• tobiaszehnder / IPP
  Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence
  ☆23Updated last month
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated last month
• AlgoLab / pantas
  Differential quantification of alternative splicing events on spliced pangenome graphs
  ☆14Updated 11 months ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆16Updated 7 months ago
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆24Updated 3 years ago
• yhg926 / TQSLE
  TQSLE v1.0 released
  ☆10Updated 2 years ago
• snu-cdrc / gencube
  Efficient retrieval, download, and unification of genomic data from leading biodiversity databases
  ☆17Updated last week
• gagneurlab / splicemap
  ☆23Updated 5 months ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• CCICB / introme
  Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
  ☆22Updated last month
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆20Updated 3 years ago
• wangshun1121 / ASCPsra
  将速铂下载工具进行封装，以便高效方便地批量下载SRA测序数据。
  ☆10Updated 5 years ago
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆31Updated 5 years ago
• srbehera / DRAGEN_Analysis
  ☆38Updated last year
• jasonwong-lab / LocusMasterTE
  Integrating long read sequencing enhances short read-based locus-specific transposable element quantification
  ☆10Updated 8 months ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆13Updated 2 years ago
• anonconda / TranSuite
  A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.
  ☆22Updated 4 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• ocroci / ChroKit
  A Shiny-based framework to analyze and visualize interactively genomic data
  ☆11Updated 2 years ago
• huangwenze / lncHOME_analysis
  lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…
  ☆12Updated 2 years ago
• biocorecrg / ExOrthist
  ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
  ☆25Updated last year