ay-lab / ExTraMapper
ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequence conservation.
☆10Updated 2 years ago
Alternatives and similar repositories for ExTraMapper:
Users that are interested in ExTraMapper are comparing it to the libraries listed below
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆22Updated 4 months ago
- Analyse RNA feature distributions.☆16Updated 4 months ago
- ☆23Updated 3 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 7 months ago
- ☆16Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 6 years ago
- ☆13Updated last year
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆14Updated 9 months ago
- A method for measuring chromosome-specific telomere length from long reads☆21Updated 10 months ago
- Blazing fast toolkit to work with .hic and .cool files☆30Updated this week
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- Bash scripts and data used in pantranscriptomic paper☆22Updated 2 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆12Updated 8 months ago
- ☆17Updated 2 years ago
- Comprehensive and scalable differential splicing analyses☆17Updated last month
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆17Updated last year
- End-guided RNA assembler☆15Updated last week
- R package to explore active transposable elements with RNA-seq data☆20Updated 2 years ago
- ☆23Updated 2 years ago
- ☆25Updated last year
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated last month
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- ☆12Updated 2 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Updated 2 years ago
- ☆21Updated last month
- Reconstruction of focal amplifications with long reads☆20Updated 2 weeks ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year