Alternatives and similar repositories for ExTraMapper

Users that are interested in ExTraMapper are comparing it to the libraries listed below

• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆17Updated 9 months ago
• xia-lab / Seq2Fun
  ☆16Updated 3 months ago
• RacconC / gtftools
  ☆14Updated 2 years ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 9 months ago
• huangwenze / lncHOME_analysis
  lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…
  ☆13Updated last year
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆19Updated 2 years ago
• AlgoLab / pantas
  Differential quantification of alternative splicing events on spliced pangenome graphs
  ☆14Updated 8 months ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• biocorecrg / ExOrthist
  ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
  ☆25Updated 10 months ago
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆24Updated 2 years ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆17Updated 3 months ago
• lucieabergeron / vertebrate_rate
  Method used in the study on germline mutation rate estimation in 68 species of vertebrates.
  ☆15Updated 4 years ago
• makovalab-psu / T2T_primate_XY
  ☆12Updated last year
• popitsch / rnalib
  rnalib: a python-based transcriptomics library
  ☆11Updated 4 months ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated 7 months ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆13Updated 2 years ago
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated last month
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 6 months ago
• tobiaszehnder / IPP
  Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence
  ☆19Updated 3 months ago
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆30Updated 5 years ago
• gymreklab / snpstr-imputation
  Scripts for analyses and figures for SNP STR Imputation manuscript
  ☆14Updated 7 years ago
• pfenninglab / halLiftover-postprocessing
  ☆22Updated 7 months ago
• marieBvr / TEs_genes_relationship_pipeline
  Distribution of TEs and their relationship to genes in host genome
  ☆23Updated 2 years ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆36Updated 6 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆25Updated 4 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated last year
• bioinfo-ut / GeneToCN
  Gene copy number prediction from k-mer frequencies
  ☆13Updated last year
• CAST-genomics / haptools
  Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
  ☆24Updated last month
• FemeniasM / ExplorATEproject
  R package to explore active transposable elements with RNA-seq data
  ☆21Updated 2 years ago