ay-lab / ExTraMapper
ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequence conservation.
☆10Updated 2 years ago
Alternatives and similar repositories for ExTraMapper:
Users that are interested in ExTraMapper are comparing it to the libraries listed below
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆21Updated 2 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 11 months ago
- ☆16Updated 10 months ago
- ☆17Updated 2 years ago
- Analyse RNA feature distributions.☆15Updated 2 months ago
- End-guided RNA assembler☆15Updated 3 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- ☆13Updated last year
- ☆16Updated 4 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- ☆11Updated 2 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- ☆23Updated 3 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆15Updated 3 years ago
- ☆28Updated 2 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆18Updated 4 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆14Updated 7 months ago
- ☆24Updated 2 years ago
- ☆24Updated 10 months ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆16Updated 4 months ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆17Updated last year
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 5 months ago
- 将速铂下载工具进行封装,以便高效方便地批量下载SRA测序数据。☆10Updated 4 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆21Updated last week
- isoCirc☆10Updated last year
- Invertory of TE-gene isoforms☆9Updated last year
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago