Alternatives and similar repositories for ExTraMapper

Users that are interested in ExTraMapper are comparing it to the libraries listed below

• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆16Updated 7 months ago
• xia-lab / Seq2Fun
  ☆16Updated last week
• RacconC / gtftools
  ☆13Updated 2 years ago
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated 3 months ago
• lucieabergeron / vertebrate_rate
  Method used in the study on germline mutation rate estimation in 68 species of vertebrates.
  ☆14Updated 3 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆18Updated 2 years ago
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆15Updated last month
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 7 months ago
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆22Updated 2 years ago
• CAST-genomics / haptools
  Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
  ☆24Updated 3 months ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆35Updated 6 years ago
• CCICB / introme
  Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
  ☆21Updated 4 months ago
• huangwenze / lncHOME_analysis
  lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…
  ☆13Updated last year
• biocorecrg / ExOrthist
  ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
  ☆25Updated 7 months ago
• marieBvr / TEs_genes_relationship_pipeline
  Distribution of TEs and their relationship to genes in host genome
  ☆22Updated 2 years ago
• LappalainenLab / lorals
  ☆36Updated 2 years ago
• ccbiolab / svpluscnv
  Integrative analysis of complex structural variants
  ☆22Updated 4 years ago
• bioinfo-ut / GeneToCN
  Gene copy number prediction from k-mer frequencies
  ☆13Updated 11 months ago
• makovalab-psu / T2T_primate_XY
  ☆12Updated last year
• HMPNK / CSA2.6
  Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes
  ☆10Updated 9 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 months ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆21Updated last year
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆11Updated last year
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆19Updated 4 months ago
• gagneurlab / splicemap
  ☆21Updated this week
• gymreklab / snpstr-imputation
  Scripts for analyses and figures for SNP STR Imputation manuscript
  ☆14Updated 6 years ago
• yhg926 / TQSLE
  TQSLE v1.0 released
  ☆10Updated last year
• FemeniasM / ExplorATEproject
  R package to explore active transposable elements with RNA-seq data
  ☆20Updated 2 years ago