Alternatives and similar repositories for ExTraMapper

Users that are interested in ExTraMapper are comparing it to the libraries listed below

• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆18Updated last year
• xia-lab / Seq2Fun
  ☆17Updated 6 months ago
• biocorecrg / ExOrthist
  ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
  ☆25Updated last year
• popitsch / rnalib
  rnalib: a python-based transcriptomics library
  ☆11Updated 2 weeks ago
• lucieabergeron / vertebrate_rate
  Method used in the study on germline mutation rate estimation in 68 species of vertebrates.
  ☆16Updated 4 years ago
• HMPNK / CSA2.6
  Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes
  ☆10Updated last year
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆24Updated 3 years ago
• jasonwong-lab / LocusMasterTE
  Integrating long read sequencing enhances short read-based locus-specific transposable element quantification
  ☆10Updated 8 months ago
• tobiaszehnder / IPP
  Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence
  ☆23Updated last month
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated 2 months ago
• CAST-genomics / haptools
  Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
  ☆24Updated last month
• AlgoLab / pantas
  Differential quantification of alternative splicing events on spliced pangenome graphs
  ☆14Updated last week
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆18Updated last month
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆36Updated 6 years ago
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆31Updated 5 years ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• huangwenze / lncHOME_analysis
  lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…
  ☆12Updated 2 years ago
• RacconC / gtftools
  ☆16Updated 2 years ago
• snu-cdrc / gencube
  Efficient retrieval, download, and unification of genomic data from leading biodiversity databases
  ☆17Updated this week
• FemeniasM / ExplorATEproject
  R package to explore active transposable elements with RNA-seq data
  ☆21Updated 3 years ago
• BorgwardtLab / networkGWAS
  Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …
  ☆16Updated 2 years ago
• js2264 / HiCExperiment
  Importing and manipulating Hi-C data in R
  ☆11Updated 6 months ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆18Updated last year
• srbehera / DRAGEN_Analysis
  ☆38Updated last year
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated 2 months ago
• mortazavilab / cerberus
  ☆20Updated this week
• matsengrp / phip-flow
  A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
  ☆12Updated 11 months ago
• rikuu / Gap2Seq
  Gap2Seq is a gap filling and insertion genotyping tool.
  ☆22Updated last year
• HKU-BAL / Clair3-RNA
  Clair3-RNA - a long-read small variant caller for RNA sequencing data
  ☆37Updated last month
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆16Updated 7 months ago